Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47426 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.46949 * 30.00103 * 3 2 1 6 6 H 1.48508 * 109.47306 * 149.99913 * 3 2 1 7 7 C 1.37881 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99724 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00385 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47112 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47140 * 55.00317 * 10 9 7 12 12 C 1.53006 * 109.47164 * 175.00266 * 10 9 7 13 13 C 1.52997 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47415 * 300.00027 * 13 12 10 15 15 H 1.08992 * 109.46974 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.46537 * 299.99923 * 14 13 12 17 17 C 1.46899 * 110.99907 * 204.99782 * 16 14 13 18 18 C 1.53006 * 117.50297 * 223.75356 * 17 16 14 19 19 C 1.53003 * 117.50323 * 155.09057 * 17 16 14 20 20 C 1.52996 * 109.46972 * 59.99860 * 14 13 12 21 21 C 1.52997 * 109.47165 * 300.00293 * 20 14 13 22 22 H 0.96992 * 119.99579 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46977 * 59.99900 * 9 7 2 24 24 H 1.08994 * 109.47189 * 299.99738 * 9 7 2 25 25 H 1.09001 * 109.46998 * 299.99705 * 12 10 9 26 26 H 1.09000 * 109.47050 * 59.99996 * 12 10 9 27 27 H 1.09000 * 109.47140 * 60.00051 * 13 12 10 28 28 H 1.09001 * 109.47230 * 179.97438 * 13 12 10 29 29 H 1.00896 * 111.00508 * 328.95207 * 16 14 13 30 30 H 1.09008 * 115.55151 * 9.41956 * 17 16 14 31 31 H 1.09002 * 117.49434 * 359.97438 * 18 17 16 32 32 H 1.08996 * 117.50113 * 145.02119 * 18 17 16 33 33 H 1.09001 * 117.49807 * 214.98216 * 19 17 16 34 34 H 1.09000 * 117.49325 * 359.97382 * 19 17 16 35 35 H 1.09000 * 109.47054 * 60.00300 * 20 14 13 36 36 H 1.09001 * 109.46997 * 180.02562 * 20 14 13 37 37 H 1.09000 * 109.47140 * 299.99954 * 21 20 14 38 38 H 1.09002 * 109.47045 * 180.02562 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8425 12 6 5.5463 -2.6386 -0.1272 13 6 6.0563 -4.0810 -0.1265 14 6 5.6520 -4.7643 1.1815 15 1 6.0157 -5.7917 1.1821 16 7 6.2382 -4.0371 2.3152 17 6 6.3966 -4.9177 3.4802 18 6 5.9914 -4.3614 4.8468 19 6 7.4716 -4.5482 4.5043 20 6 4.1272 -4.7624 1.3077 21 6 3.6173 -3.3199 1.3069 22 1 -0.4849 0.8400 -0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 5.8343 -2.1515 -1.0589 26 1 5.9812 -2.0994 0.7143 27 1 5.6214 -4.6206 -0.9678 28 1 7.1425 -4.0825 -0.2169 29 1 7.1181 -3.6155 2.0584 30 1 6.2202 -5.9775 3.2960 31 1 5.6076 -3.3417 4.8813 32 1 5.5488 -5.0551 5.5615 33 1 8.0022 -5.3648 4.9939 34 1 8.0616 -3.6518 4.3133 35 1 3.6923 -5.3019 0.4664 36 1 3.8392 -5.2487 2.2397 37 1 4.0522 -2.7803 2.1482 38 1 2.5310 -3.3185 1.3973 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389070759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = -18.694611 kcal Electronic energy + Delta-G solvation = -15761.395209 eV Core-core repulsion = 13409.471395 eV Total energy + Delta-G solvation = -2351.923814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21320 -37.98426 -35.46270 -33.86524 -31.55694 -31.05863 -28.17598 -24.46796 -23.49479 -23.11757 -22.02121 -21.43009 -19.98083 -18.82132 -16.77565 -16.62556 -16.41567 -16.10329 -15.17701 -14.98552 -14.56436 -14.41111 -14.03871 -13.69545 -13.36691 -12.91671 -12.84602 -12.69869 -12.43619 -12.31101 -12.07506 -11.87139 -11.71926 -11.58903 -11.47323 -11.14671 -11.01432 -10.76820 -10.60676 -10.57918 -9.05964 -8.25306 -6.26727 1.34651 1.37055 1.49503 2.38463 3.00406 3.09912 3.15767 3.90421 4.00729 4.06619 4.12457 4.19314 4.39087 4.47651 4.52426 4.62720 4.71251 4.81212 4.81856 4.83924 4.84515 5.05346 5.12886 5.16176 5.22606 5.26576 5.33030 5.36121 5.46461 5.49515 5.59829 5.66307 5.82692 5.91077 6.29665 6.37410 6.59016 6.80636 7.36656 8.91788 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.006718 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.540826 B = 4167.064395 C = 4348.231387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.067 4.067 11 H 0.041 0.959 12 C -0.103 4.103 13 C -0.113 4.113 14 C 0.101 3.899 15 H 0.058 0.942 16 N -0.660 5.660 17 C 0.014 3.986 18 C -0.186 4.186 19 C -0.178 4.178 20 C -0.101 4.101 21 C -0.085 4.085 22 H 0.264 0.736 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.348 0.652 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.959 -10.130 5.087 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.044 4.044 10 C -0.085 4.085 11 H 0.059 0.941 12 C -0.141 4.141 13 C -0.151 4.151 14 C -0.009 4.009 15 H 0.076 0.924 16 N -0.293 5.293 17 C -0.096 4.096 18 C -0.224 4.224 19 C -0.216 4.216 20 C -0.140 4.140 21 C -0.122 4.122 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.169 0.831 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 17.227 -9.768 5.271 20.493 hybrid contribution -0.017 0.442 -0.248 0.507 sum 17.210 -9.326 5.022 20.208 Atomic orbital electron populations 1.70080 1.08238 1.27860 1.53540 1.26012 0.95583 1.03410 0.94587 0.85682 0.79453 0.78543 0.79107 1.19149 1.21113 1.17339 1.21507 0.92190 0.92796 1.48982 0.95022 1.19582 0.93788 0.95368 0.95659 1.20895 0.95351 0.95336 0.96942 0.94051 1.21471 0.94234 0.97120 1.01258 1.21698 1.01089 0.95602 0.96675 1.21452 0.94065 0.95596 0.89738 0.92375 1.60082 1.30951 1.32963 1.05267 1.22494 1.04100 0.95437 0.87592 1.23132 0.98038 1.02316 0.98961 1.23283 0.91546 1.03761 1.03005 1.21510 0.95657 0.96142 1.00652 1.21162 0.97914 0.95793 0.97361 0.92746 0.96954 0.97002 0.92549 0.91740 0.91168 0.90011 0.83112 0.87888 0.90263 0.88348 0.87310 0.88557 0.92405 0.92736 0.92539 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.09 13.96 21.45 0.30 -61.79 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 3 Si 0.95 46.28 27.47 68.60 1.88 48.17 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 7 C -0.52 -30.97 8.96 25.60 0.23 -30.74 16 8 H 0.03 2.09 7.30 -2.91 -0.02 2.07 16 9 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 10 C -0.07 -2.68 2.14 -10.79 -0.02 -2.71 16 11 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.10 -3.15 5.04 30.60 0.15 -2.99 16 13 C -0.11 -2.62 5.30 30.59 0.16 -2.45 16 14 C 0.10 2.38 2.78 44.92 0.12 2.51 16 15 H 0.06 1.17 7.57 -2.39 -0.02 1.15 16 16 N -0.66 -15.27 5.07 -469.47 -2.38 -17.65 16 17 C 0.01 0.29 6.03 44.92 0.27 0.56 16 18 C -0.19 -3.94 10.46 30.62 0.32 -3.62 16 19 C -0.18 -2.98 10.34 30.62 0.32 -2.66 16 20 C -0.10 -3.07 5.54 30.59 0.17 -2.90 16 21 C -0.08 -3.34 4.85 30.59 0.15 -3.19 16 22 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 23 H 0.01 0.60 7.20 -2.39 -0.02 0.59 16 24 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 29 H 0.35 7.06 8.14 -89.70 -0.73 6.33 16 30 H 0.10 1.93 7.60 -2.38 -0.02 1.91 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 37 H 0.06 2.30 7.60 -2.39 -0.02 2.28 16 38 H 0.02 1.00 6.95 -2.39 -0.02 0.99 16 Total: -1.00 -67.60 294.74 2.47 -65.13 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.22 Total: 14.11 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 2.44 Total: -47.97 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.08 Total: -79.44 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -67.60 2.47 -65.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389070759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.435 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds