Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48497 * 109.47131 * 239.99970 * 3 2 1 5 5 H 1.48501 * 109.46832 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47139 * 119.99992 * 3 2 1 7 7 C 1.37878 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99589 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47198 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.46905 * 111.00154 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.05730 * 33.58600 * 12 11 10 14 14 C 1.54367 * 110.04567 * 272.11123 * 12 11 10 15 15 C 1.54890 * 104.19685 * 217.09076 * 14 12 11 16 16 C 1.54884 * 102.74835 * 37.96697 * 15 14 12 17 17 H 1.09010 * 110.59730 * 80.79406 * 16 15 14 18 18 C 1.52998 * 110.48991 * 203.37884 * 16 15 14 19 19 C 1.52997 * 117.50352 * 243.52615 * 18 16 15 20 20 C 1.52995 * 117.50283 * 174.86475 * 18 16 15 21 21 C 1.53876 * 110.03161 * 154.99916 * 12 11 10 22 22 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47298 * 60.00576 * 9 7 2 24 24 H 1.08994 * 109.47746 * 300.00089 * 9 7 2 25 25 H 1.09006 * 109.46936 * 60.00313 * 10 9 7 26 26 H 1.09001 * 109.47480 * 300.01042 * 10 9 7 27 27 H 1.00899 * 110.99827 * 303.95589 * 11 10 9 28 28 H 1.09002 * 110.46302 * 98.42403 * 14 12 11 29 29 H 1.08998 * 110.62375 * 335.83708 * 14 12 11 30 30 H 1.09007 * 110.75694 * 279.65389 * 15 14 12 31 31 H 1.08998 * 110.76013 * 156.28542 * 15 14 12 32 32 H 1.09006 * 115.54896 * 29.18840 * 18 16 15 33 33 H 1.09007 * 117.49540 * 359.97438 * 19 18 16 34 34 H 1.09002 * 117.50531 * 145.01320 * 19 18 16 35 35 H 1.09004 * 117.50308 * 214.98262 * 20 18 16 36 36 H 1.09004 * 117.49717 * 359.97438 * 20 18 16 37 37 H 1.09002 * 110.03428 * 0.02562 * 21 12 11 38 38 H 1.08995 * 110.02995 * 238.61875 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 7 1.5107 -4.9342 0.0020 12 6 2.4352 -6.0759 0.0024 13 1 3.3334 -5.8294 0.5686 14 6 2.8096 -6.4540 -1.4467 15 6 2.8949 -8.0005 -1.4258 16 6 1.7307 -8.3942 -0.4832 17 1 0.7815 -8.3790 -1.0190 18 6 1.9783 -9.7759 0.1255 19 6 0.9891 -10.8895 -0.2239 20 6 0.9845 -10.2731 1.1772 21 6 1.7487 -7.3098 0.6138 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8725 -3.6039 0.8910 26 1 2.8713 -3.6047 -0.8889 27 1 0.8746 -4.9842 0.7836 28 1 3.7736 -6.0225 -1.7162 29 1 2.0373 -6.1239 -2.1414 30 1 3.8506 -8.3292 -1.0174 31 1 2.7389 -8.4095 -2.4240 32 1 3.0249 -10.0536 0.2510 33 1 0.1616 -10.6377 -0.8872 34 1 1.3848 -11.8999 -0.3279 35 1 1.3771 -10.8781 1.9945 36 1 0.1544 -9.6156 1.4357 37 1 0.7294 -7.0617 0.9099 38 1 2.3132 -7.6616 1.4773 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389282015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = -20.755401 kcal Electronic energy + Delta-G solvation = -14992.938537 eV Core-core repulsion = 12640.925360 eV Total energy + Delta-G solvation = -2352.013177 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10150 -37.76529 -35.93791 -34.44355 -31.28411 -29.53938 -28.00126 -25.62060 -23.17217 -22.91421 -22.30090 -21.19160 -20.27630 -18.51409 -16.82187 -16.70810 -16.55510 -16.24146 -15.48046 -15.13061 -14.58585 -14.46666 -14.19117 -13.53665 -13.27493 -12.90733 -12.74189 -12.46597 -12.36097 -12.24358 -12.14027 -11.98376 -11.92879 -11.59392 -11.44902 -11.38700 -11.22084 -10.91339 -10.63403 -10.56954 -9.26264 -8.21058 -6.33104 1.39579 1.43259 1.51254 2.40072 2.93418 3.11996 3.38031 3.65738 3.71997 3.83569 4.14771 4.23053 4.33396 4.47587 4.49164 4.56646 4.60755 4.70198 4.74876 4.84266 4.89401 4.92417 5.02096 5.05739 5.10425 5.16420 5.26067 5.31971 5.34209 5.41733 5.46897 5.57849 5.66542 5.79001 6.15557 6.33347 6.58256 6.83905 7.36199 8.90976 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066999 B = 0.004226 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.815654 B = 6623.341103 C = 6816.823935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.085 3.915 11 N -0.691 5.691 12 C 0.076 3.924 13 H 0.037 0.963 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.053 4.053 17 H 0.067 0.933 18 C -0.146 4.146 19 C -0.179 4.179 20 C -0.184 4.184 21 C -0.110 4.110 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.009 1.009 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.337 0.663 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -20.162 0.418 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.044 4.044 11 N -0.323 5.323 12 C -0.034 4.034 13 H 0.055 0.945 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.072 4.072 17 H 0.085 0.915 18 C -0.164 4.164 19 C -0.216 4.216 20 C -0.221 4.221 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.009 0.991 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.903 -20.058 -0.256 20.651 hybrid contribution 0.318 1.233 0.923 1.573 sum 5.221 -18.825 0.667 19.547 Atomic orbital electron populations 1.70102 1.07858 1.27925 1.51276 1.25998 0.95796 1.03439 0.94522 0.85455 0.78244 0.77838 0.79226 1.19136 1.20677 1.19074 1.21590 0.93510 0.92314 1.51187 0.92224 1.18919 0.94297 0.92364 0.94959 1.21788 0.95520 0.88687 0.98355 1.60722 1.20067 1.01678 1.49799 1.22315 0.93792 0.90407 0.96852 0.94473 1.22424 1.00596 0.96542 0.95838 1.22475 0.98404 0.93641 0.99787 1.21452 0.98728 0.91899 0.95131 0.91453 1.22336 0.96720 0.93941 1.03432 1.23083 1.01873 0.98096 0.98515 1.22988 1.02147 1.04014 0.92951 1.22314 1.00437 0.93647 0.98426 0.92683 0.98840 0.99086 0.96623 0.92716 0.84492 0.92411 0.92237 0.90454 0.90702 0.87141 0.89089 0.87833 0.88056 0.89414 0.91848 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C 0.09 3.77 5.45 86.30 0.47 4.24 16 11 N -0.69 -25.65 6.27 -487.64 -3.06 -28.71 16 12 C 0.08 2.24 3.25 45.67 0.15 2.39 16 13 H 0.04 1.13 7.81 -2.39 -0.02 1.11 16 14 C -0.12 -3.15 6.49 31.70 0.21 -2.94 16 15 C -0.11 -2.15 6.33 31.88 0.20 -1.95 16 16 C -0.05 -1.10 3.05 -9.72 -0.03 -1.13 16 17 H 0.07 1.51 7.95 -2.38 -0.02 1.49 16 18 C -0.15 -2.45 5.08 -10.80 -0.05 -2.51 16 19 C -0.18 -2.70 10.19 30.62 0.31 -2.39 16 20 C -0.18 -2.94 9.93 30.62 0.30 -2.63 16 21 C -0.11 -2.61 5.76 31.32 0.18 -2.43 16 22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.01 -0.42 8.14 -2.38 -0.02 -0.43 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.02 0.68 8.07 -2.38 -0.02 0.66 16 26 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.34 12.16 8.01 -89.69 -0.72 11.44 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.84 8.06 -2.39 -0.02 1.83 16 30 H 0.08 1.39 7.92 -2.38 -0.02 1.37 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 1.69 7.95 -2.38 -0.02 1.67 16 33 H 0.09 1.42 8.07 -2.38 -0.02 1.40 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.58 7.47 -2.39 -0.02 1.56 16 38 H 0.07 1.61 7.84 -2.39 -0.02 1.59 16 Total: -1.00 -64.08 306.09 2.13 -61.95 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.28 Total: 16.29 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 2.59 Total: -38.83 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.77 Total: -86.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.08 2.13 -61.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389282015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.194 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds