Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 2 16 16 C 1.35313 * 126.12339 * 94.68663 * 15 14 13 17 17 C 1.39879 * 107.91797 * 179.90730 * 16 15 14 18 18 N 1.30836 * 108.19706 * 0.36620 * 17 16 15 19 19 N 1.34948 * 126.12503 * 275.00837 * 15 14 13 20 20 C 1.46501 * 126.03777 * 359.93247 * 19 15 14 21 21 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 23 23 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 24 24 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 25 25 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00898 * 111.00336 * 321.05112 * 13 2 1 28 28 H 1.08995 * 109.47485 * 300.00201 * 14 13 2 29 29 H 1.09005 * 109.46756 * 60.00060 * 14 13 2 30 30 H 1.07994 * 126.04303 * 0.03643 * 16 15 14 31 31 H 1.07997 * 125.89987 * 180.14151 * 17 16 15 32 32 H 1.08994 * 109.47086 * 90.01125 * 20 19 15 33 33 H 1.09001 * 109.46664 * 210.00616 * 20 19 15 34 34 H 1.08995 * 109.46959 * 330.00503 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 6 2.5874 -0.5220 -3.5560 16 6 1.8248 -1.1042 -4.5102 17 6 2.6817 -1.6836 -5.4519 18 7 3.9144 -1.4639 -5.0722 19 7 3.8809 -0.7326 -3.8779 20 6 5.0445 -0.2763 -3.1136 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7517 -1.7714 1.2058 25 1 1.6054 -0.2616 2.1370 26 1 6.0262 -1.5157 3.1436 27 1 1.4496 -1.4980 -1.4100 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 0.7453 -1.1174 -4.5406 31 1 2.3782 -2.2224 -6.3372 32 1 5.3241 -1.0394 -2.3873 33 1 5.8782 -0.0984 -3.7929 34 1 4.7969 0.6483 -2.5922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389363101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = 72.938875 kcal Electronic energy + Delta-G solvation = -15251.211462 eV Core-core repulsion = 12799.720830 eV Total energy + Delta-G solvation = -2451.490632 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94392 -36.92346 -33.20620 -32.68243 -31.61942 -29.07441 -27.75082 -26.38904 -24.72386 -22.57761 -20.89111 -19.97561 -19.35089 -16.67555 -16.44846 -15.46105 -14.73627 -14.50520 -14.25389 -13.91901 -13.51158 -13.29515 -12.58285 -12.49915 -12.29840 -12.16123 -12.05018 -11.84304 -11.63864 -11.09855 -10.73373 -10.46700 -10.34192 -9.77761 -9.63398 -9.12266 -9.01542 -8.45324 -8.30158 -7.75089 -5.94632 -3.88348 2.11521 2.83336 3.03184 3.33998 3.42398 3.45209 4.52334 4.66526 4.86164 4.98407 5.28767 5.41299 5.49645 5.50723 5.58106 5.71067 5.78147 5.83775 5.88755 5.96243 6.02085 6.24173 6.37181 6.44808 6.73514 6.87744 7.10156 7.23267 7.28539 7.69107 7.84338 7.95877 8.00284 8.67642 9.14468 9.68984 11.19331 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029688 B = 0.007527 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.910934 B = 3719.037202 C = 4318.694425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.099 3.901 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.489 4.489 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.290 1.290 13 N -0.658 5.658 14 C 0.119 3.881 15 C 0.103 3.897 16 C -0.284 4.284 17 C 0.039 3.961 18 N -0.305 5.305 19 N -0.352 5.352 20 C 0.103 3.897 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.260 0.740 27 H 0.336 0.664 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.178 0.822 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 2.330 -10.703 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.010 4.010 3 H 0.090 0.910 4 C -0.042 4.042 5 C -0.528 4.528 6 H 0.093 0.907 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.217 1.217 13 N -0.289 5.289 14 C -0.012 4.012 15 C -0.027 4.027 16 C -0.314 4.314 17 C -0.146 4.146 18 N -0.128 5.128 19 N -0.134 5.134 20 C -0.038 4.038 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.159 0.841 31 H 0.195 0.805 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.062 2.236 -10.613 12.425 hybrid contribution -2.180 -0.407 0.789 2.354 sum -8.243 1.829 -9.824 12.954 Atomic orbital electron populations 1.22599 0.99194 1.01434 1.01070 1.21582 0.89942 0.98263 0.91241 0.91047 1.19611 0.97841 0.95484 0.91291 1.20993 0.89494 1.33884 1.08394 0.90695 1.25006 0.94704 0.96251 0.97925 1.69899 1.06378 1.46160 1.32497 0.86869 0.80241 0.80018 0.82592 1.20633 1.19284 1.21652 1.60499 1.58243 1.08398 1.01744 1.20517 0.99205 0.94639 0.86840 1.21074 0.84807 0.99681 0.97132 1.21170 1.00184 1.11312 0.98765 1.23691 0.90311 1.00499 1.00126 1.77304 1.21908 1.14966 0.98590 1.48494 1.05530 1.41146 1.18231 1.21906 0.85374 1.01490 0.95055 0.92905 0.92317 0.93861 0.96541 0.96835 0.93066 0.84542 0.93438 0.90038 0.84147 0.80518 0.89400 0.90101 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 9.16 37.16 0.34 -2.35 16 2 C 0.10 1.80 2.53 -67.72 -0.17 1.63 16 3 H 0.07 1.32 7.80 -51.93 -0.40 0.92 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.46 9.39 -34.44 -0.32 -13.78 16 6 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 8 N -0.91 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.66 -11.51 5.95 -107.99 -0.64 -12.15 16 14 C 0.12 1.75 5.65 -4.97 -0.03 1.73 16 15 C 0.10 1.59 6.44 -82.26 -0.53 1.06 16 16 C -0.28 -4.00 10.72 -40.01 -0.43 -4.43 16 17 C 0.04 0.55 12.03 -17.36 -0.21 0.34 16 18 N -0.31 -5.13 12.57 30.63 0.39 -4.75 16 19 N -0.35 -5.84 4.01 -63.89 -0.26 -6.10 16 20 C 0.10 1.54 11.27 59.85 0.67 2.22 16 21 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.34 5.63 8.46 -39.29 -0.33 5.30 16 28 H 0.05 0.61 7.44 -51.93 -0.39 0.23 16 29 H 0.08 1.22 7.16 -51.93 -0.37 0.84 16 30 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.25 7.15 -51.93 -0.37 0.88 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -31.75 286.30 -6.12 -37.87 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.14 Total: 2.95 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.88 Total: -12.15 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.26 Total: -50.04 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.75 -6.12 -37.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389363101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.806 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds