Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46895 * 109.47206 * 239.99530 * 2 1 3 14 14 C 1.46900 * 111.00012 * 84.99923 * 13 2 1 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 2 16 16 C 1.35313 * 126.12339 * 94.68663 * 15 14 13 17 17 C 1.39879 * 107.91797 * 179.90730 * 16 15 14 18 18 N 1.30836 * 108.19706 * 0.36620 * 17 16 15 19 19 N 1.34948 * 126.12503 * 275.00837 * 15 14 13 20 20 C 1.46501 * 126.03777 * 359.93247 * 19 15 14 21 21 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 23 23 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 24 24 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 25 25 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00898 * 111.00336 * 321.05112 * 13 2 1 28 28 H 1.08995 * 109.47485 * 300.00201 * 14 13 2 29 29 H 1.09005 * 109.46756 * 60.00060 * 14 13 2 30 30 H 1.07994 * 126.04303 * 0.03643 * 16 15 14 31 31 H 1.07997 * 125.89987 * 180.14151 * 17 16 15 32 32 H 1.08994 * 109.47086 * 90.01125 * 20 19 15 33 33 H 1.09001 * 109.46664 * 210.00616 * 20 19 15 34 34 H 1.08995 * 109.46959 * 330.00503 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 7 2.0197 -0.6926 -1.1993 14 6 2.0825 0.2224 -2.3469 15 6 2.5874 -0.5220 -3.5560 16 6 1.8248 -1.1042 -4.5102 17 6 2.6817 -1.6836 -5.4519 18 7 3.9144 -1.4639 -5.0722 19 7 3.8809 -0.7326 -3.8779 20 6 5.0445 -0.2763 -3.1136 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7517 -1.7714 1.2058 25 1 1.6054 -0.2616 2.1370 26 1 6.0262 -1.5157 3.1436 27 1 1.4496 -1.4980 -1.4100 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 0.7453 -1.1174 -4.5406 31 1 2.3782 -2.2224 -6.3372 32 1 5.3241 -1.0394 -2.3873 33 1 5.8782 -0.0984 -3.7929 34 1 4.7969 0.6483 -2.5922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389363101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = 50.509268 kcal Electronic energy + Delta-G solvation = -15252.184082 eV Core-core repulsion = 12799.720830 eV Total energy + Delta-G solvation = -2452.463252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09661 -38.32860 -34.91192 -34.12122 -33.14195 -30.54207 -29.30246 -27.56443 -25.99192 -24.41009 -22.02266 -21.46440 -20.60248 -18.75357 -17.73065 -16.72632 -16.37188 -15.85821 -15.69268 -15.26675 -14.84088 -14.62937 -14.27715 -13.93930 -13.56894 -13.52750 -13.32692 -13.20595 -13.18431 -12.56742 -12.34285 -12.09895 -11.63400 -11.58342 -11.40126 -11.12955 -10.65663 -10.26104 -9.45859 -9.04965 -8.15828 -6.13400 0.93512 1.37650 1.40554 1.50620 1.68415 1.94481 2.43766 3.18588 3.44227 3.75196 3.80953 4.15202 4.23468 4.34035 4.40488 4.48653 4.58563 4.63693 4.71890 4.82196 4.87804 4.98774 5.18189 5.21793 5.29006 5.32566 5.54217 5.78550 5.82101 6.09362 6.29675 6.49127 6.66136 6.83505 6.94113 7.47184 9.01117 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.029688 B = 0.007527 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.910934 B = 3719.037202 C = 4318.694425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H 0.063 0.937 4 C -0.005 4.005 5 C -0.486 4.486 6 H 0.038 0.962 7 C -0.005 4.005 8 N -0.958 5.958 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.250 1.250 12 H -0.294 1.294 13 N -0.681 5.681 14 C 0.127 3.873 15 C 0.085 3.915 16 C -0.278 4.278 17 C 0.042 3.958 18 N -0.341 5.341 19 N -0.371 5.371 20 C 0.107 3.893 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.013 0.987 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.341 0.659 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.169 0.831 31 H 0.214 0.786 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 2.099 -11.266 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.005 4.005 3 H 0.081 0.919 4 C -0.043 4.043 5 C -0.524 4.524 6 H 0.057 0.943 7 C -0.200 4.200 8 N -0.601 5.601 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.174 1.174 12 H -0.221 1.221 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.043 4.043 16 C -0.308 4.308 17 C -0.143 4.143 18 N -0.163 5.163 19 N -0.153 5.153 20 C -0.034 4.034 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.031 0.969 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.230 0.770 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.959 2.016 -11.187 14.473 hybrid contribution -1.263 -0.311 0.858 1.559 sum -10.222 1.705 -10.329 14.632 Atomic orbital electron populations 1.22446 0.95695 1.02315 1.02657 1.21354 0.92599 0.96912 0.89609 0.91889 1.19600 0.94522 0.95959 0.94206 1.21320 0.92125 1.32162 1.06794 0.94319 1.25921 0.95494 0.97700 1.00843 1.70070 1.08314 1.48064 1.33670 0.85790 0.79271 0.78650 0.79616 1.19470 1.17385 1.22066 1.60324 1.59020 1.09366 1.02594 1.20468 1.00440 0.93714 0.85660 1.21380 0.84768 1.00366 0.97827 1.21561 1.01517 1.09949 0.97787 1.24370 0.89447 0.99562 1.00918 1.77269 1.23726 1.16107 0.99222 1.48634 1.06059 1.42001 1.18635 1.21812 0.86162 1.00542 0.94911 0.92349 0.91726 0.91319 0.96872 0.96144 0.93252 0.84038 0.90519 0.90965 0.81303 0.76982 0.92245 0.88423 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.16 71.98 0.66 -3.76 16 2 C 0.10 3.64 2.53 44.92 0.11 3.75 16 3 H 0.06 2.27 7.80 -2.39 -0.02 2.26 16 4 C -0.01 -0.22 3.72 29.85 0.11 -0.11 16 5 C -0.49 -27.16 9.39 25.60 0.24 -26.92 16 6 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 7 C 0.00 -0.29 5.47 84.65 0.46 0.17 16 8 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 9 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 N -0.68 -23.05 5.95 -495.58 -2.95 -26.00 16 14 C 0.13 3.57 5.65 85.56 0.48 4.05 16 15 C 0.09 2.54 6.44 41.41 0.27 2.81 16 16 C -0.28 -7.07 10.72 21.99 0.24 -6.83 16 17 C 0.04 1.08 12.03 85.24 1.03 2.11 16 18 N -0.34 -11.20 12.57 -57.02 -0.72 -11.91 16 19 N -0.37 -12.28 4.01 -356.04 -1.43 -13.71 16 20 C 0.11 3.36 11.27 127.77 1.44 4.80 16 21 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.43 7.45 -2.39 -0.02 1.42 16 24 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 25 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 26 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.34 10.78 8.46 -89.70 -0.76 10.02 16 28 H 0.08 1.71 7.44 -2.39 -0.02 1.69 16 29 H 0.07 2.14 7.16 -2.38 -0.02 2.12 16 30 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.09 2.74 7.15 -2.39 -0.02 2.73 16 Total: -1.00 -69.52 286.30 2.39 -67.13 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.26 Total: 18.02 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 5.04 Total: -19.94 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.80 Total: -111.83 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.52 2.39 -67.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389363101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.637 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds