Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48502 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47393 * 300.00246 * 3 2 1 6 6 H 1.48502 * 109.47158 * 60.00094 * 3 2 1 7 7 C 1.37878 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46942 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00611 * 179.97438 * 11 10 9 13 13 H 1.09005 * 112.84423 * 23.80558 * 12 11 10 14 14 C 1.53777 * 113.69684 * 252.54101 * 12 11 10 15 15 C 1.53775 * 87.07992 * 220.00319 * 14 12 11 16 16 C 1.53779 * 87.08438 * 25.43258 * 15 14 12 17 17 H 1.09002 * 113.61731 * 89.11293 * 16 15 14 18 18 C 1.53000 * 113.69071 * 220.00724 * 16 15 14 19 19 C 1.53774 * 113.61463 * 258.20046 * 18 16 15 20 20 C 1.53955 * 87.02154 * 220.04706 * 19 18 16 21 21 C 1.53777 * 113.61513 * 160.58818 * 18 16 15 22 22 H 0.96999 * 120.00226 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46716 * 60.00493 * 9 7 2 24 24 H 1.08991 * 109.47421 * 300.00450 * 9 7 2 25 25 H 1.09002 * 109.47028 * 60.00664 * 10 9 7 26 26 H 1.08996 * 109.47654 * 300.00834 * 10 9 7 27 27 H 1.00901 * 111.00158 * 56.05031 * 11 10 9 28 28 H 1.09008 * 113.61204 * 334.55434 * 14 12 11 29 29 H 1.08996 * 113.61474 * 105.45314 * 14 12 11 30 30 H 1.08993 * 113.61636 * 270.87622 * 15 14 12 31 31 H 1.09008 * 113.61006 * 139.97865 * 15 14 12 32 32 H 1.09000 * 112.84761 * 29.39533 * 18 16 15 33 33 H 1.08998 * 113.61828 * 334.56487 * 19 18 16 34 34 H 1.08998 * 113.62037 * 105.47042 * 19 18 16 35 35 H 1.09004 * 113.53758 * 270.81265 * 20 19 18 36 36 H 1.08998 * 113.66812 * 139.92637 * 20 19 18 37 37 H 1.08996 * 113.61734 * 254.53356 * 21 18 16 38 38 H 1.09001 * 113.61343 * 25.35476 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4352 -6.0759 -0.0018 13 1 3.4158 -5.8267 0.4038 14 6 2.4957 -6.8214 -1.3454 15 6 2.5489 -8.1243 -0.5305 16 6 1.8305 -7.3586 0.5931 17 1 0.7434 -7.4012 0.5248 18 6 2.3512 -7.6897 1.9931 19 6 1.4465 -8.6573 2.7740 20 6 1.7305 -7.7933 4.0162 21 6 1.9984 -6.6284 3.0486 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8718 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8904 27 1 0.8747 -4.9842 -0.7828 28 1 1.5905 -6.7171 -1.9437 29 1 3.4048 -6.6243 -1.9135 30 1 3.5604 -8.4352 -0.2695 31 1 1.9540 -8.9314 -0.9583 32 1 3.4029 -7.9762 1.9967 33 1 0.4044 -8.6343 2.4551 34 1 1.8464 -9.6688 2.8440 35 1 2.6122 -8.1092 4.5739 36 1 0.8583 -7.6410 4.6519 37 1 2.8432 -6.0043 3.3397 38 1 1.1083 -6.0486 2.8042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393657760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 17.303728 kcal Electronic energy + Delta-G solvation = -15279.794169 eV Core-core repulsion = 12929.431360 eV Total energy + Delta-G solvation = -2350.362809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80396 -37.30108 -34.46438 -32.43246 -28.88793 -27.34713 -25.51258 -24.61768 -22.96552 -22.48571 -20.67570 -19.27506 -19.13531 -16.35658 -15.74180 -15.37954 -14.97311 -14.39586 -14.08322 -13.50547 -13.18975 -12.78562 -12.33543 -12.23864 -12.08768 -11.74775 -11.71509 -11.43365 -11.00620 -10.93778 -10.86335 -10.53583 -10.35938 -10.33256 -10.06366 -9.85853 -9.52672 -9.22634 -9.06369 -8.33327 -7.65153 -5.97699 -3.99955 3.32390 3.39708 3.43838 4.44677 4.53234 4.66267 4.78197 4.87475 4.94652 4.97233 5.13964 5.27869 5.38418 5.46445 5.59978 5.72904 5.79752 5.81292 5.92190 5.97123 5.98926 6.03460 6.07318 6.23974 6.26036 6.38550 6.47019 6.52950 6.61548 6.76393 7.03063 7.58277 7.78652 7.87850 8.02896 8.13346 8.47136 9.07756 9.63796 11.13832 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.005372 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.949996 B = 5210.635651 C = 5672.016681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.067 3.933 11 N -0.678 5.678 12 C 0.077 3.923 13 H 0.089 0.911 14 C -0.173 4.173 15 C -0.136 4.136 16 C -0.088 4.088 17 H 0.091 0.909 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.127 4.127 22 H 0.260 0.740 23 H 0.012 0.988 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.336 0.664 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -16.784 2.281 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.307 5.307 12 C -0.034 4.034 13 H 0.107 0.893 14 C -0.212 4.212 15 C -0.174 4.174 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.115 4.115 19 C -0.173 4.173 20 C -0.185 4.185 21 C -0.164 4.164 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.154 0.846 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.910 -16.639 2.974 17.349 hybrid contribution 0.797 0.988 -0.971 1.598 sum 4.706 -15.651 2.003 16.466 Atomic orbital electron populations 1.69981 1.06033 1.26428 1.50877 1.24998 0.94823 0.99190 0.95355 0.86549 0.80093 0.83859 0.77569 1.19784 1.21047 1.20984 1.21228 0.92998 0.91071 1.50571 0.92771 1.19074 0.94062 0.90552 0.97610 1.22152 0.96903 0.88672 0.98389 1.60505 1.19136 1.01930 1.49169 1.23003 0.96112 0.90207 0.94091 0.89308 1.23641 1.01870 0.97697 0.97989 1.22811 1.00531 0.96413 0.97676 1.22731 0.99940 0.95458 0.92606 0.89091 1.22450 0.98604 0.96910 0.93586 1.22956 1.00074 0.97459 0.96764 1.22882 1.01180 0.97924 0.96496 1.22837 1.02536 0.95835 0.95222 0.93081 0.96917 0.95709 0.92518 0.96853 0.84557 0.90194 0.92018 0.90597 0.91882 0.90066 0.90284 0.92285 0.90879 0.91846 0.92077 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.43 5.47 -3.83 -0.02 1.41 16 11 N -0.68 -12.08 6.62 -105.87 -0.70 -12.78 16 12 C 0.08 1.12 3.48 -66.90 -0.23 0.89 16 13 H 0.09 1.35 7.82 -51.93 -0.41 0.95 16 14 C -0.17 -2.18 7.70 -25.92 -0.20 -2.38 16 15 C -0.14 -1.51 7.64 -25.92 -0.20 -1.71 16 16 C -0.09 -1.10 3.30 -89.81 -0.30 -1.40 16 17 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 18 C -0.10 -1.14 3.50 -89.81 -0.31 -1.46 16 19 C -0.14 -1.43 7.66 -25.83 -0.20 -1.63 16 20 C -0.15 -1.62 8.09 -25.82 -0.21 -1.83 16 21 C -0.13 -1.66 7.38 -25.92 -0.19 -1.85 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.34 5.86 8.20 -39.29 -0.32 5.54 16 28 H 0.08 1.00 7.83 -51.92 -0.41 0.60 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.78 7.98 -51.93 -0.41 0.37 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.08 0.85 7.97 -51.93 -0.41 0.43 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -29.42 306.08 -9.77 -39.19 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.98 Total: 1.75 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.42 Total: -23.14 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.04 Total: -39.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.42 -9.77 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.490 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds