Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48502 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47393 * 300.00246 * 3 2 1 6 6 H 1.48502 * 109.47158 * 60.00094 * 3 2 1 7 7 C 1.37878 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46942 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00611 * 179.97438 * 11 10 9 13 13 H 1.09005 * 112.84423 * 23.80558 * 12 11 10 14 14 C 1.53777 * 113.69684 * 252.54101 * 12 11 10 15 15 C 1.53775 * 87.07992 * 220.00319 * 14 12 11 16 16 C 1.53779 * 87.08438 * 25.43258 * 15 14 12 17 17 H 1.09002 * 113.61731 * 89.11293 * 16 15 14 18 18 C 1.53000 * 113.69071 * 220.00724 * 16 15 14 19 19 C 1.53774 * 113.61463 * 258.20046 * 18 16 15 20 20 C 1.53955 * 87.02154 * 220.04706 * 19 18 16 21 21 C 1.53777 * 113.61513 * 160.58818 * 18 16 15 22 22 H 0.96999 * 120.00226 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46716 * 60.00493 * 9 7 2 24 24 H 1.08991 * 109.47421 * 300.00450 * 9 7 2 25 25 H 1.09002 * 109.47028 * 60.00664 * 10 9 7 26 26 H 1.08996 * 109.47654 * 300.00834 * 10 9 7 27 27 H 1.00901 * 111.00158 * 56.05031 * 11 10 9 28 28 H 1.09008 * 113.61204 * 334.55434 * 14 12 11 29 29 H 1.08996 * 113.61474 * 105.45314 * 14 12 11 30 30 H 1.08993 * 113.61636 * 270.87622 * 15 14 12 31 31 H 1.09008 * 113.61006 * 139.97865 * 15 14 12 32 32 H 1.09000 * 112.84761 * 29.39533 * 18 16 15 33 33 H 1.08998 * 113.61828 * 334.56487 * 19 18 16 34 34 H 1.08998 * 113.62037 * 105.47042 * 19 18 16 35 35 H 1.09004 * 113.53758 * 270.81265 * 20 19 18 36 36 H 1.08998 * 113.66812 * 139.92637 * 20 19 18 37 37 H 1.08996 * 113.61734 * 254.53356 * 21 18 16 38 38 H 1.09001 * 113.61343 * 25.35476 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4352 -6.0759 -0.0018 13 1 3.4158 -5.8267 0.4038 14 6 2.4957 -6.8214 -1.3454 15 6 2.5489 -8.1243 -0.5305 16 6 1.8305 -7.3586 0.5931 17 1 0.7434 -7.4012 0.5248 18 6 2.3512 -7.6897 1.9931 19 6 1.4465 -8.6573 2.7740 20 6 1.7305 -7.7933 4.0162 21 6 1.9984 -6.6284 3.0486 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8718 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8904 27 1 0.8747 -4.9842 -0.7828 28 1 1.5905 -6.7171 -1.9437 29 1 3.4048 -6.6243 -1.9135 30 1 3.5604 -8.4352 -0.2695 31 1 1.9540 -8.9314 -0.9583 32 1 3.4029 -7.9762 1.9967 33 1 0.4044 -8.6343 2.4551 34 1 1.8464 -9.6688 2.8440 35 1 2.6122 -8.1092 4.5739 36 1 0.8583 -7.6410 4.6519 37 1 2.8432 -6.0043 3.3397 38 1 1.1083 -6.0486 2.8042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393657760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = 0.485710 kcal Electronic energy + Delta-G solvation = -15280.523453 eV Core-core repulsion = 12929.431360 eV Total energy + Delta-G solvation = -2351.092093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84318 -38.36304 -36.22798 -34.41735 -30.80002 -28.31852 -26.70410 -26.23028 -24.21090 -23.61935 -22.50994 -20.36511 -20.14022 -18.53468 -16.90812 -16.62094 -16.38395 -16.03905 -15.57657 -14.92234 -14.33112 -14.25340 -13.96077 -13.54327 -13.22576 -13.19572 -12.87053 -12.68993 -12.62573 -12.51796 -12.41972 -11.96048 -11.92753 -11.51166 -11.32982 -11.29319 -11.16629 -10.66198 -10.59169 -10.50893 -9.09227 -8.21203 -6.32816 1.39378 1.40030 1.53377 2.39893 3.12202 3.36770 3.57437 3.80671 3.83721 3.98945 4.02643 4.09488 4.19247 4.46126 4.54107 4.62762 4.65952 4.72845 4.82020 4.91853 4.99688 5.04645 5.07039 5.07919 5.10530 5.14392 5.22308 5.28531 5.42270 5.49617 5.60084 5.69138 5.77390 5.81815 6.17733 6.37031 6.60788 6.84906 7.36639 8.91255 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.005372 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.949996 B = 5210.635651 C = 5672.016681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.088 3.912 11 N -0.683 5.683 12 C 0.065 3.935 13 H 0.083 0.917 14 C -0.170 4.170 15 C -0.120 4.120 16 C -0.084 4.084 17 H 0.082 0.918 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.139 4.139 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.008 1.008 25 H 0.052 0.948 26 H 0.015 0.985 27 H 0.337 0.663 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -17.933 2.198 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.041 4.041 11 N -0.313 5.313 12 C -0.046 4.046 13 H 0.101 0.899 14 C -0.209 4.209 15 C -0.157 4.157 16 C -0.103 4.103 17 H 0.100 0.900 18 C -0.113 4.113 19 C -0.164 4.164 20 C -0.178 4.178 21 C -0.176 4.176 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.156 0.844 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.320 -17.815 2.890 18.816 hybrid contribution 0.321 1.336 -0.932 1.661 sum 5.641 -16.479 1.958 17.527 Atomic orbital electron populations 1.70113 1.07853 1.27752 1.51524 1.25976 0.95759 1.03384 0.94583 0.85369 0.79013 0.78604 0.77865 1.18603 1.20202 1.20298 1.21645 0.93470 0.92330 1.50815 0.92302 1.18921 0.94309 0.92427 0.94878 1.21733 0.95453 0.88735 0.98159 1.60449 1.19766 1.01546 1.49498 1.23185 0.95410 0.89597 0.96375 0.89877 1.23606 1.02091 0.98200 0.96982 1.22754 1.01288 0.95835 0.95866 1.22669 0.99547 0.94291 0.93781 0.89991 1.22475 0.99539 0.96557 0.92680 1.22902 0.99703 0.98070 0.95737 1.22882 1.01829 0.96610 0.96513 1.22813 1.00955 0.96499 0.97375 0.92725 0.99153 0.98912 0.92925 0.96701 0.84450 0.90211 0.91632 0.89186 0.90286 0.88866 0.90600 0.90347 0.89435 0.91808 0.93174 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.77 5.23 29.85 0.16 1.92 16 10 C 0.09 3.85 5.47 86.30 0.47 4.32 16 11 N -0.68 -24.83 6.62 -488.87 -3.24 -28.06 16 12 C 0.06 1.84 3.48 45.44 0.16 2.00 16 13 H 0.08 2.48 7.82 -2.38 -0.02 2.46 16 14 C -0.17 -4.00 7.70 31.12 0.24 -3.76 16 15 C -0.12 -2.30 7.64 31.12 0.24 -2.06 16 16 C -0.08 -1.97 3.30 -10.27 -0.03 -2.01 16 17 H 0.08 2.11 7.97 -2.39 -0.02 2.09 16 18 C -0.09 -2.06 3.50 -10.27 -0.04 -2.10 16 19 C -0.13 -2.41 7.66 31.18 0.24 -2.17 16 20 C -0.14 -2.89 8.09 31.18 0.25 -2.64 16 21 C -0.14 -3.63 7.38 31.12 0.23 -3.40 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.05 2.32 8.13 -2.39 -0.02 2.30 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.34 12.03 8.20 -89.69 -0.74 11.30 16 28 H 0.08 1.89 7.83 -2.38 -0.02 1.87 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.52 7.98 -2.39 -0.02 1.51 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 1.85 7.98 -2.39 -0.02 1.83 16 33 H 0.08 1.50 7.97 -2.39 -0.02 1.48 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -63.77 306.08 1.95 -61.82 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.27 Total: 17.86 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 2.61 Total: -40.99 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.95 Total: -85.68 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.77 1.95 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.308 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds