Wall clock time and date at job start Mon Mar 30 2020 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99937 * 180.02562 * 11 10 9 13 13 H 1.08998 * 112.85409 * 336.19106 * 12 11 10 14 14 C 1.53784 * 113.61613 * 107.50146 * 12 11 10 15 15 C 1.53783 * 87.08028 * 89.11399 * 14 12 11 16 16 C 1.53778 * 87.08418 * 25.43276 * 15 14 12 17 17 H 1.09002 * 113.61772 * 89.11243 * 16 15 14 18 18 C 1.52998 * 113.61611 * 220.01964 * 16 15 14 19 19 C 1.53777 * 113.61219 * 254.99299 * 18 16 15 20 20 C 1.53785 * 87.08335 * 220.01672 * 19 18 16 21 21 C 1.53782 * 113.61331 * 157.49628 * 18 16 15 22 22 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 24 24 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 25 25 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.00896 * 111.00299 * 56.03874 * 11 10 9 28 28 H 1.09002 * 113.61267 * 203.66019 * 14 12 11 29 29 H 1.08995 * 113.61144 * 334.56494 * 14 12 11 30 30 H 1.08994 * 113.61772 * 270.88040 * 15 14 12 31 31 H 1.09004 * 113.68749 * 139.98817 * 15 14 12 32 32 H 1.08996 * 112.85028 * 26.30053 * 18 16 15 33 33 H 1.08997 * 113.62049 * 334.56539 * 19 18 16 34 34 H 1.09002 * 113.61335 * 105.47113 * 19 18 16 35 35 H 1.08999 * 113.61583 * 270.88961 * 20 19 18 36 36 H 1.08998 * 113.61714 * 139.97978 * 20 19 18 37 37 H 1.09001 * 113.61329 * 254.52277 * 21 18 16 38 38 H 1.08995 * 113.61680 * 25.43489 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0030 13 1 3.4165 -5.8266 -0.4011 14 6 2.4918 -6.8207 1.3472 15 6 1.3355 -7.6896 0.8246 16 6 1.8314 -7.3585 -0.5929 17 1 2.5775 -8.0584 -0.9691 18 6 0.7024 -7.0976 -1.5919 19 6 0.4693 -8.2572 -2.5746 20 6 0.2599 -7.1899 -3.6618 21 6 1.1357 -6.2594 -2.8061 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8896 25 1 2.8727 -3.6047 -0.8877 26 1 2.8713 -3.6038 0.8923 27 1 0.8752 -4.9845 -0.7807 28 1 3.4183 -7.3737 1.5014 29 1 2.2205 -6.2007 2.2016 30 1 0.3489 -7.2838 1.0479 31 1 1.4281 -8.7441 1.0843 32 1 -0.2094 -6.7372 -1.1155 33 1 1.3512 -8.8772 -2.7356 34 1 -0.4255 -8.8405 -2.3574 35 1 -0.7736 -6.8555 -3.7522 36 1 0.7071 -7.4502 -4.6212 37 1 0.7789 -5.2299 -2.7758 38 1 2.1998 -6.3332 -3.0303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393657762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:38 Heat of formation + Delta-G solvation = 17.411828 kcal Electronic energy + Delta-G solvation = -15539.706752 eV Core-core repulsion = 13189.348631 eV Total energy + Delta-G solvation = -2350.358122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09594 -37.25281 -34.64358 -32.54053 -28.53255 -27.51762 -25.61618 -24.40910 -23.21554 -22.72597 -20.89824 -19.37997 -18.62805 -16.65779 -15.94935 -15.71176 -14.91791 -14.74925 -13.69941 -13.63505 -13.23913 -13.02392 -12.62385 -12.46800 -11.92403 -11.74176 -11.66789 -11.42720 -11.27412 -10.89660 -10.62454 -10.56948 -10.47090 -10.13934 -10.08992 -9.88374 -9.56074 -9.51727 -8.54648 -8.29505 -7.81311 -6.33089 -4.01607 3.45710 3.48049 3.66734 4.37030 4.47587 4.58980 4.65876 4.77476 4.83536 4.96394 5.13229 5.25996 5.36614 5.44907 5.47628 5.67393 5.71116 5.76719 5.82909 5.87660 5.94114 5.99007 6.06421 6.19063 6.23675 6.29446 6.37393 6.47068 6.51348 6.62619 6.87574 7.33888 7.54379 7.77138 7.95764 8.28790 8.49831 8.92220 9.70796 11.08071 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.005899 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.607585 B = 4745.815617 C = 5250.973746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.013 3.987 10 C 0.074 3.926 11 N -0.675 5.675 12 C 0.070 3.930 13 H 0.048 0.952 14 C -0.137 4.137 15 C -0.123 4.123 16 C -0.107 4.107 17 H 0.086 0.914 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.141 4.141 22 H 0.269 0.731 23 H 0.016 0.984 24 H 0.003 0.997 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.340 0.660 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -16.530 -3.562 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.641 4.641 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.054 4.054 11 N -0.309 5.309 12 C -0.041 4.041 13 H 0.066 0.934 14 C -0.175 4.175 15 C -0.161 4.161 16 C -0.126 4.126 17 H 0.105 0.895 18 C -0.120 4.120 19 C -0.171 4.171 20 C -0.180 4.180 21 C -0.179 4.179 22 H 0.080 0.920 23 H 0.034 0.966 24 H 0.021 0.979 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.362 -14.875 -2.888 15.336 hybrid contribution 0.645 -1.651 -0.909 1.992 sum 3.006 -16.527 -3.797 17.222 Atomic orbital electron populations 1.70769 1.06869 1.30666 1.46602 1.25838 0.96559 1.02664 0.93811 0.83542 0.74870 0.75353 0.76464 1.21532 1.21442 1.20754 1.21994 0.94217 0.92026 1.55861 0.93455 1.19189 0.94680 0.92307 0.96277 1.22033 0.96598 0.88020 0.98733 1.60473 1.19245 1.01371 1.49778 1.22563 0.94946 0.90392 0.96193 0.93357 1.22940 0.97913 0.98326 0.98344 1.22808 0.99283 0.98633 0.95327 1.22833 0.97300 0.97786 0.94665 0.89529 1.22483 0.98749 0.96836 0.93896 1.22929 1.01437 0.96266 0.96508 1.22813 1.00334 0.97365 0.97447 1.22959 0.99917 0.98806 0.96192 0.92032 0.96610 0.97883 0.96599 0.92295 0.83895 0.90905 0.90792 0.89778 0.92532 0.88686 0.90484 0.91813 0.90217 0.91815 0.91216 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.58 13.65 55.43 0.76 -27.82 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.60 -17.65 9.11 -34.44 -0.31 -17.96 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.34 4.54 -27.88 -0.13 0.22 16 10 C 0.07 1.64 5.47 -3.82 -0.02 1.61 16 11 N -0.68 -12.35 6.40 -105.86 -0.68 -13.03 16 12 C 0.07 1.06 3.83 -66.90 -0.26 0.80 16 13 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 14 C -0.14 -1.87 7.88 -25.92 -0.20 -2.08 16 15 C -0.12 -1.52 7.55 -25.92 -0.20 -1.72 16 16 C -0.11 -1.32 3.52 -89.81 -0.32 -1.64 16 17 H 0.09 0.98 7.93 -51.93 -0.41 0.56 16 18 C -0.10 -1.22 2.41 -89.81 -0.22 -1.44 16 19 C -0.13 -1.37 7.64 -25.92 -0.20 -1.56 16 20 C -0.14 -1.51 8.08 -25.91 -0.21 -1.72 16 21 C -0.14 -1.77 6.57 -25.91 -0.17 -1.94 16 22 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 23 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 24 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 25 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.34 6.03 5.08 -39.29 -0.20 5.83 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.13 7.94 -51.93 -0.41 0.71 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.24 7.61 -51.93 -0.40 0.85 16 33 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.99 7.38 -51.93 -0.38 0.61 16 38 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -30.45 299.30 -9.57 -40.02 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.75 Total: 2.71 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.33 Total: -27.07 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.08 Total: -40.85 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.45 -9.57 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.434 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds