Wall clock time and date at job start Mon Mar 30 2020 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99937 * 180.02562 * 11 10 9 13 13 H 1.08998 * 112.85409 * 336.19106 * 12 11 10 14 14 C 1.53784 * 113.61613 * 107.50146 * 12 11 10 15 15 C 1.53783 * 87.08028 * 89.11399 * 14 12 11 16 16 C 1.53778 * 87.08418 * 25.43276 * 15 14 12 17 17 H 1.09002 * 113.61772 * 89.11243 * 16 15 14 18 18 C 1.52998 * 113.61611 * 220.01964 * 16 15 14 19 19 C 1.53777 * 113.61219 * 254.99299 * 18 16 15 20 20 C 1.53785 * 87.08335 * 220.01672 * 19 18 16 21 21 C 1.53782 * 113.61331 * 157.49628 * 18 16 15 22 22 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 24 24 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 25 25 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 26 26 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 27 27 H 1.00896 * 111.00299 * 56.03874 * 11 10 9 28 28 H 1.09002 * 113.61267 * 203.66019 * 14 12 11 29 29 H 1.08995 * 113.61144 * 334.56494 * 14 12 11 30 30 H 1.08994 * 113.61772 * 270.88040 * 15 14 12 31 31 H 1.09004 * 113.68749 * 139.98817 * 15 14 12 32 32 H 1.08996 * 112.85028 * 26.30053 * 18 16 15 33 33 H 1.08997 * 113.62049 * 334.56539 * 19 18 16 34 34 H 1.09002 * 113.61335 * 105.47113 * 19 18 16 35 35 H 1.08999 * 113.61583 * 270.88961 * 20 19 18 36 36 H 1.08998 * 113.61714 * 139.97978 * 20 19 18 37 37 H 1.09001 * 113.61329 * 254.52277 * 21 18 16 38 38 H 1.08995 * 113.61680 * 25.43489 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0030 13 1 3.4165 -5.8266 -0.4011 14 6 2.4918 -6.8207 1.3472 15 6 1.3355 -7.6896 0.8246 16 6 1.8314 -7.3585 -0.5929 17 1 2.5775 -8.0584 -0.9691 18 6 0.7024 -7.0976 -1.5919 19 6 0.4693 -8.2572 -2.5746 20 6 0.2599 -7.1899 -3.6618 21 6 1.1357 -6.2594 -2.8061 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8896 25 1 2.8727 -3.6047 -0.8877 26 1 2.8713 -3.6038 0.8923 27 1 0.8752 -4.9845 -0.7807 28 1 3.4183 -7.3737 1.5014 29 1 2.2205 -6.2007 2.2016 30 1 0.3489 -7.2838 1.0479 31 1 1.4281 -8.7441 1.0843 32 1 -0.2094 -6.7372 -1.1155 33 1 1.3512 -8.8772 -2.7356 34 1 -0.4255 -8.8405 -2.3574 35 1 -0.7736 -6.8555 -3.7522 36 1 0.7071 -7.4502 -4.6212 37 1 0.7789 -5.2299 -2.7758 38 1 2.1998 -6.3332 -3.0303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393657762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:38 Heat of formation + Delta-G solvation = -0.166424 kcal Electronic energy + Delta-G solvation = -15540.469003 eV Core-core repulsion = 13189.348631 eV Total energy + Delta-G solvation = -2351.120372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16506 -38.30838 -36.53363 -34.50864 -30.46669 -28.50806 -26.65755 -26.04503 -24.80903 -23.73106 -22.85957 -20.30870 -19.85404 -18.80499 -17.19226 -16.87041 -16.21748 -15.90356 -15.63962 -15.24293 -14.87488 -14.31336 -14.18587 -13.45336 -13.40071 -13.25086 -12.86527 -12.71093 -12.66492 -12.45546 -12.13342 -12.01239 -11.86270 -11.61021 -11.41715 -11.35802 -10.89053 -10.67554 -10.57528 -10.54100 -9.32219 -8.72663 -6.43092 1.51372 1.60442 1.80082 2.55055 3.13347 3.19073 3.36231 3.67070 3.77612 3.91410 3.95846 4.03554 4.21755 4.29060 4.36270 4.43308 4.50862 4.65705 4.75391 4.82757 4.84474 4.85119 4.98723 5.01098 5.05427 5.10866 5.16359 5.19829 5.27623 5.37526 5.43518 5.51640 5.63359 5.90572 6.13685 6.22767 6.44299 6.57817 7.39823 8.68497 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033743 B = 0.005899 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.607585 B = 4745.815617 C = 5250.973746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.121 2.879 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.018 3.982 10 C 0.094 3.906 11 N -0.678 5.678 12 C 0.052 3.948 13 H 0.045 0.955 14 C -0.135 4.135 15 C -0.116 4.116 16 C -0.092 4.092 17 H 0.110 0.890 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.149 4.149 22 H 0.255 0.745 23 H -0.010 1.010 24 H -0.014 1.014 25 H 0.014 0.986 26 H 0.053 0.947 27 H 0.341 0.659 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -17.943 -3.980 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.941 3.059 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.207 1.207 7 C -0.660 4.660 8 H 0.069 0.931 9 C -0.019 4.019 10 C -0.035 4.035 11 N -0.312 5.312 12 C -0.058 4.058 13 H 0.063 0.937 14 C -0.173 4.173 15 C -0.154 4.154 16 C -0.110 4.110 17 H 0.128 0.872 18 C -0.124 4.124 19 C -0.157 4.157 20 C -0.176 4.176 21 C -0.186 4.186 22 H 0.064 0.936 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.163 0.837 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.672 -16.331 -3.304 17.062 hybrid contribution 0.223 -1.246 -0.773 1.484 sum 3.895 -17.577 -4.077 18.459 Atomic orbital electron populations 1.70911 1.07972 1.29836 1.48533 1.27524 0.96591 1.06946 0.92489 0.82903 0.74101 0.70805 0.78085 1.19300 1.19326 1.20686 1.22422 0.94677 0.93341 1.55581 0.93111 1.19072 0.94936 0.93809 0.94114 1.21640 0.95235 0.88346 0.98328 1.60390 1.19717 1.00997 1.50064 1.22756 0.94298 0.90394 0.98330 0.93742 1.22989 0.99683 0.98204 0.96440 1.22745 0.97896 0.99769 0.94967 1.22810 0.97465 0.96002 0.94761 0.87222 1.22464 0.98064 0.97981 0.93918 1.22878 1.02562 0.95560 0.94681 1.22810 0.99881 0.96823 0.98061 1.22981 1.00320 0.97711 0.97630 0.93604 0.99164 0.99591 0.96732 0.92801 0.83740 0.88459 0.92949 0.91336 0.89952 0.90234 0.88950 0.90761 0.90359 0.90560 0.93984 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.86 13.65 21.45 0.29 -59.57 16 2 C -0.04 -2.28 5.46 84.66 0.46 -1.82 16 3 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.62 -37.05 9.11 25.60 0.23 -36.82 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.02 1.00 4.54 29.85 0.14 1.14 16 10 C 0.09 4.21 5.47 86.31 0.47 4.68 16 11 N -0.68 -25.32 6.40 -488.84 -3.13 -28.45 16 12 C 0.05 1.55 3.83 45.45 0.17 1.72 16 13 H 0.04 1.36 7.87 -2.39 -0.02 1.34 16 14 C -0.13 -3.49 7.88 31.12 0.25 -3.24 16 15 C -0.12 -2.63 7.55 31.12 0.24 -2.40 16 16 C -0.09 -2.06 3.52 -10.27 -0.04 -2.10 16 17 H 0.11 2.04 7.93 -2.39 -0.02 2.02 16 18 C -0.11 -2.41 2.41 -10.27 -0.02 -2.44 16 19 C -0.12 -2.11 7.64 31.12 0.24 -1.87 16 20 C -0.14 -2.72 8.08 31.12 0.25 -2.47 16 21 C -0.15 -3.67 6.57 31.12 0.20 -3.46 16 22 H 0.25 16.59 7.22 -92.70 -0.67 15.92 16 23 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 24 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 25 H 0.01 0.65 8.13 -2.39 -0.02 0.63 16 26 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.34 12.54 5.08 -89.70 -0.46 12.08 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.77 7.94 -2.39 -0.02 1.75 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.07 7.61 -2.39 -0.02 2.05 16 33 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.25 7.38 -2.39 -0.02 1.23 16 38 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -66.32 299.30 2.46 -63.86 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.65 Total: 19.85 kcal Atomic # 6 Polarization: -51.66 SS G_CDS: 2.59 Total: -49.07 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -2.84 Total: -88.01 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -66.32 2.46 -63.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.698 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds