Wall clock time and date at job start Mon Mar 30 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99989 * 180.02562 * 11 10 9 13 13 H 1.09006 * 112.84947 * 23.80358 * 12 11 10 14 14 C 1.53780 * 113.61232 * 252.49433 * 12 11 10 15 15 C 1.53779 * 87.08002 * 220.01624 * 14 12 11 16 16 C 1.53780 * 113.61521 * 154.99698 * 12 11 10 17 17 H 1.09003 * 113.61331 * 254.61507 * 16 12 11 18 18 C 1.53001 * 113.61481 * 25.43438 * 16 12 11 19 19 C 1.53781 * 113.61114 * 279.13557 * 18 16 12 20 20 C 1.53956 * 87.01901 * 220.04527 * 19 18 16 21 21 C 1.53779 * 113.61579 * 181.52883 * 18 16 12 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 24 24 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 25 25 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 26 26 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 27 27 H 1.00895 * 111.00101 * 303.94946 * 11 10 9 28 28 H 1.08999 * 113.61416 * 334.56778 * 14 12 11 29 29 H 1.09006 * 113.61084 * 105.46692 * 14 12 11 30 30 H 1.09004 * 113.61733 * 270.88697 * 15 14 12 31 31 H 1.09005 * 113.61289 * 139.98330 * 15 14 12 32 32 H 1.09001 * 112.85094 * 50.33020 * 18 16 12 33 33 H 1.08998 * 113.61822 * 334.56722 * 19 18 16 34 34 H 1.09003 * 113.61591 * 105.47411 * 19 18 16 35 35 H 1.09001 * 113.54055 * 270.81112 * 20 19 18 36 36 H 1.09002 * 113.74497 * 139.94258 * 20 19 18 37 37 H 1.08994 * 113.61526 * 254.52572 * 21 18 16 38 38 H 1.08999 * 113.61406 * 25.34991 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5109 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 1 3.4160 -5.8263 0.4076 14 6 2.4936 -6.8218 -1.3411 15 6 2.5471 -8.1246 -0.5259 16 6 1.8307 -7.3580 0.5984 17 1 2.2029 -7.5937 1.5954 18 6 0.3047 -7.4171 0.5046 19 6 -0.4115 -6.6175 1.6057 20 6 -1.4203 -7.7780 1.6805 21 6 -0.3027 -8.6819 1.1339 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5563 0.8920 24 1 0.6242 -2.5575 -0.8880 25 1 2.8714 -3.6046 -0.8890 26 1 2.8727 -3.6039 0.8909 27 1 0.8748 -4.9842 0.7836 28 1 1.5877 -6.7172 -1.9382 29 1 3.4021 -6.6254 -1.9106 30 1 3.5589 -8.4359 -0.2661 31 1 1.9513 -8.9315 -0.9526 32 1 -0.0661 -7.2073 -0.4987 33 1 0.1812 -6.4951 2.5122 34 1 -0.8462 -5.6820 1.2535 35 1 -2.2639 -7.6662 0.9993 36 1 -1.7269 -8.0284 2.6961 37 1 -0.6496 -9.4106 0.4014 38 1 0.3205 -9.1258 1.9102 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393657763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:40 Heat of formation + Delta-G solvation = 16.093828 kcal Electronic energy + Delta-G solvation = -15484.674548 eV Core-core repulsion = 13134.259274 eV Total energy + Delta-G solvation = -2350.415274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12395 -37.11373 -34.73647 -32.62587 -28.66329 -27.14883 -25.59552 -24.32660 -23.35521 -22.75324 -20.82938 -19.70643 -18.40943 -16.70559 -15.97512 -15.64090 -14.64588 -14.58638 -13.93846 -13.70303 -13.51417 -12.69281 -12.52628 -12.42009 -12.26168 -11.82526 -11.62820 -11.35081 -11.15072 -10.83423 -10.64534 -10.54031 -10.35116 -10.10801 -10.09016 -9.94991 -9.66880 -9.53013 -8.52921 -8.28606 -7.80615 -6.32651 -4.01034 3.45684 3.49457 3.65131 4.40232 4.51149 4.57789 4.67479 4.82028 4.86998 4.96377 5.10233 5.25270 5.33317 5.45365 5.49912 5.70519 5.71996 5.74393 5.80517 5.88249 5.89238 6.03894 6.13456 6.14276 6.20031 6.27343 6.35079 6.47761 6.54899 6.64594 6.89100 7.35280 7.56023 7.79010 7.97922 8.30039 8.50860 8.93075 9.71424 11.08609 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.005640 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.198899 B = 4963.607762 C = 5526.885673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.071 3.929 11 N -0.681 5.681 12 C 0.063 3.937 13 H 0.065 0.935 14 C -0.125 4.125 15 C -0.137 4.137 16 C -0.104 4.104 17 H 0.068 0.932 18 C -0.080 4.080 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.137 4.137 22 H 0.270 0.730 23 H 0.003 0.997 24 H 0.016 0.984 25 H 0.058 0.942 26 H 0.014 0.986 27 H 0.338 0.662 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -17.279 1.879 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.025 4.025 10 C -0.057 4.057 11 N -0.314 5.314 12 C -0.048 4.048 13 H 0.082 0.918 14 C -0.164 4.164 15 C -0.175 4.175 16 C -0.123 4.123 17 H 0.086 0.914 18 C -0.098 4.098 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.174 4.174 22 H 0.080 0.920 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.342 -15.621 1.213 15.726 hybrid contribution 0.671 -1.607 0.916 1.967 sum 2.013 -17.228 2.129 17.475 Atomic orbital electron populations 1.70740 1.06871 1.30694 1.46711 1.25840 0.96567 1.02665 0.93821 0.83506 0.74604 0.75093 0.76742 1.21439 1.21574 1.21005 1.22033 0.94247 0.92052 1.55755 0.93434 1.19193 0.94692 0.92353 0.96262 1.22046 0.96641 0.88443 0.98617 1.60822 1.19288 1.01703 1.49597 1.23017 0.95279 0.89798 0.96710 0.91761 1.23008 1.01982 0.94659 0.96736 1.22762 1.00010 0.97053 0.97631 1.22646 0.95015 0.96691 0.97977 0.91353 1.22178 0.92437 0.95850 0.99345 1.22991 0.97961 0.98074 0.98892 1.22824 0.96977 0.97055 1.00999 1.22935 0.97887 0.96521 1.00086 0.91997 0.97893 0.96602 0.92336 0.96743 0.84057 0.89517 0.92325 0.90688 0.91461 0.88572 0.90510 0.90564 0.90284 0.91837 0.91930 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.65 55.43 0.76 -27.91 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.60 -17.72 9.11 -34.44 -0.31 -18.03 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.33 4.54 -27.89 -0.13 0.20 16 10 C 0.07 1.57 5.47 -3.83 -0.02 1.55 16 11 N -0.68 -12.51 6.07 -105.86 -0.64 -13.16 16 12 C 0.06 0.95 4.03 -66.90 -0.27 0.68 16 13 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 14 C -0.13 -1.71 7.57 -25.92 -0.20 -1.90 16 15 C -0.14 -1.54 7.67 -25.92 -0.20 -1.74 16 16 C -0.10 -1.29 3.49 -89.81 -0.31 -1.61 16 17 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.08 -0.96 2.65 -89.81 -0.24 -1.20 16 19 C -0.14 -1.76 5.88 -25.83 -0.15 -1.91 16 20 C -0.14 -1.48 8.09 -25.83 -0.21 -1.69 16 21 C -0.14 -1.39 7.65 -25.92 -0.20 -1.59 16 22 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 23 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 24 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.01 0.32 8.13 -51.93 -0.42 -0.10 16 27 H 0.34 6.02 5.33 -39.29 -0.21 5.81 16 28 H 0.09 1.25 7.71 -51.93 -0.40 0.85 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.10 1.28 7.56 -51.93 -0.39 0.89 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.08 1.07 7.36 -51.93 -0.38 0.68 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -30.61 298.77 -9.56 -40.17 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.76 Total: 2.48 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -2.33 Total: -26.89 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.11 Total: -41.07 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.61 -9.56 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.264 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds