Wall clock time and date at job start Mon Mar 30 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99989 * 180.02562 * 11 10 9 13 13 H 1.09006 * 112.84947 * 23.80358 * 12 11 10 14 14 C 1.53780 * 113.61232 * 252.49433 * 12 11 10 15 15 C 1.53779 * 87.08002 * 220.01624 * 14 12 11 16 16 C 1.53780 * 113.61521 * 154.99698 * 12 11 10 17 17 H 1.09003 * 113.61331 * 254.61507 * 16 12 11 18 18 C 1.53001 * 113.61481 * 25.43438 * 16 12 11 19 19 C 1.53781 * 113.61114 * 279.13557 * 18 16 12 20 20 C 1.53956 * 87.01901 * 220.04527 * 19 18 16 21 21 C 1.53779 * 113.61579 * 181.52883 * 18 16 12 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 24 24 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 25 25 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 26 26 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 27 27 H 1.00895 * 111.00101 * 303.94946 * 11 10 9 28 28 H 1.08999 * 113.61416 * 334.56778 * 14 12 11 29 29 H 1.09006 * 113.61084 * 105.46692 * 14 12 11 30 30 H 1.09004 * 113.61733 * 270.88697 * 15 14 12 31 31 H 1.09005 * 113.61289 * 139.98330 * 15 14 12 32 32 H 1.09001 * 112.85094 * 50.33020 * 18 16 12 33 33 H 1.08998 * 113.61822 * 334.56722 * 19 18 16 34 34 H 1.09003 * 113.61591 * 105.47411 * 19 18 16 35 35 H 1.09001 * 113.54055 * 270.81112 * 20 19 18 36 36 H 1.09002 * 113.74497 * 139.94258 * 20 19 18 37 37 H 1.08994 * 113.61526 * 254.52572 * 21 18 16 38 38 H 1.08999 * 113.61406 * 25.34991 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5109 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 1 3.4160 -5.8263 0.4076 14 6 2.4936 -6.8218 -1.3411 15 6 2.5471 -8.1246 -0.5259 16 6 1.8307 -7.3580 0.5984 17 1 2.2029 -7.5937 1.5954 18 6 0.3047 -7.4171 0.5046 19 6 -0.4115 -6.6175 1.6057 20 6 -1.4203 -7.7780 1.6805 21 6 -0.3027 -8.6819 1.1339 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5563 0.8920 24 1 0.6242 -2.5575 -0.8880 25 1 2.8714 -3.6046 -0.8890 26 1 2.8727 -3.6039 0.8909 27 1 0.8748 -4.9842 0.7836 28 1 1.5877 -6.7172 -1.9382 29 1 3.4021 -6.6254 -1.9106 30 1 3.5589 -8.4359 -0.2661 31 1 1.9513 -8.9315 -0.9526 32 1 -0.0661 -7.2073 -0.4987 33 1 0.1812 -6.4951 2.5122 34 1 -0.8462 -5.6820 1.2535 35 1 -2.2639 -7.6662 0.9993 36 1 -1.7269 -8.0284 2.6961 37 1 -0.6496 -9.4106 0.4014 38 1 0.3205 -9.1258 1.9102 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393657763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:40 Heat of formation + Delta-G solvation = -1.470348 kcal Electronic energy + Delta-G solvation = -15485.436188 eV Core-core repulsion = 13134.259274 eV Total energy + Delta-G solvation = -2351.176914 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17293 -38.17000 -36.58592 -34.60959 -30.59360 -28.13652 -26.67250 -26.04107 -24.39408 -24.26247 -22.75303 -20.64778 -19.54280 -18.83973 -17.14200 -16.88574 -16.12711 -15.72423 -15.59894 -15.43831 -14.83088 -14.34777 -13.94637 -13.65789 -13.33069 -13.22029 -13.17126 -12.76287 -12.52409 -12.21078 -12.18291 -11.98786 -11.90912 -11.46516 -11.38687 -11.24380 -10.94320 -10.72131 -10.60560 -10.57084 -9.32176 -8.72733 -6.43088 1.51080 1.60953 1.78840 2.54821 3.13377 3.31179 3.41364 3.63036 3.76837 3.94172 3.97247 4.01385 4.19617 4.31614 4.37800 4.43330 4.53022 4.63167 4.81480 4.84918 4.86161 4.88288 4.94388 5.07409 5.09635 5.11421 5.16388 5.20877 5.24514 5.38779 5.46083 5.53111 5.68197 5.91075 6.14054 6.24895 6.45353 6.58598 7.39864 8.68466 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.005640 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.198899 B = 4963.607762 C = 5526.885673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.123 2.877 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.017 3.983 10 C 0.089 3.911 11 N -0.684 5.684 12 C 0.045 3.955 13 H 0.062 0.938 14 C -0.128 4.128 15 C -0.118 4.118 16 C -0.096 4.096 17 H 0.079 0.921 18 C -0.083 4.083 19 C -0.151 4.151 20 C -0.137 4.137 21 C -0.122 4.122 22 H 0.255 0.745 23 H -0.014 1.014 24 H -0.010 1.010 25 H 0.053 0.947 26 H 0.013 0.987 27 H 0.340 0.660 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -18.592 2.198 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.944 3.056 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.660 4.660 8 H 0.068 0.932 9 C -0.020 4.020 10 C -0.040 4.040 11 N -0.317 5.317 12 C -0.065 4.065 13 H 0.080 0.920 14 C -0.166 4.166 15 C -0.156 4.156 16 C -0.115 4.115 17 H 0.097 0.903 18 C -0.101 4.101 19 C -0.189 4.189 20 C -0.174 4.174 21 C -0.160 4.160 22 H 0.064 0.936 23 H 0.004 0.996 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.161 0.839 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.511 -16.977 1.528 17.230 hybrid contribution 0.278 -1.225 0.810 1.494 sum 2.789 -18.202 2.338 18.562 Atomic orbital electron populations 1.70883 1.07960 1.29870 1.48597 1.27526 0.96598 1.06944 0.92487 0.82868 0.74109 0.70735 0.77905 1.19654 1.19353 1.20581 1.22455 0.94662 0.93384 1.55521 0.93167 1.19080 0.94952 0.93841 0.94119 1.21678 0.95318 0.88787 0.98256 1.60774 1.19783 1.01212 1.49927 1.23278 0.94799 0.89559 0.98821 0.91986 1.23001 1.01543 0.96072 0.96031 1.22709 1.01025 0.96060 0.95811 1.22625 0.95145 0.94743 0.98939 0.90277 1.22153 0.92295 0.97257 0.98431 1.23029 0.99030 0.97705 0.99129 1.22817 0.96809 0.95953 1.01829 1.22871 0.97163 0.95667 1.00261 0.93565 0.99585 0.99142 0.92822 0.96836 0.83867 0.90697 0.92119 0.88991 0.89916 0.90134 0.90413 0.93165 0.90279 0.90660 0.90686 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.65 21.45 0.29 -59.62 16 2 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 3 Si 1.12 51.50 29.90 68.60 2.05 53.55 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.62 -37.15 9.11 25.60 0.23 -36.92 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.02 0.97 4.54 29.85 0.14 1.10 16 10 C 0.09 4.01 5.47 86.30 0.47 4.48 16 11 N -0.68 -25.59 6.07 -488.84 -2.97 -28.56 16 12 C 0.05 1.34 4.03 45.44 0.18 1.53 16 13 H 0.06 1.88 7.87 -2.38 -0.02 1.86 16 14 C -0.13 -3.33 7.57 31.12 0.24 -3.10 16 15 C -0.12 -2.32 7.67 31.12 0.24 -2.08 16 16 C -0.10 -2.19 3.49 -10.27 -0.04 -2.22 16 17 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 18 C -0.08 -1.90 2.65 -10.27 -0.03 -1.92 16 19 C -0.15 -3.73 5.88 31.18 0.18 -3.54 16 20 C -0.14 -2.67 8.09 31.18 0.25 -2.42 16 21 C -0.12 -2.16 7.65 31.12 0.24 -1.93 16 22 H 0.25 16.62 7.22 -92.71 -0.67 15.95 16 23 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 24 H -0.01 -0.58 8.01 -2.39 -0.02 -0.60 16 25 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.01 0.60 8.13 -2.39 -0.02 0.59 16 27 H 0.34 12.48 5.33 -89.70 -0.48 12.00 16 28 H 0.07 2.13 7.71 -2.39 -0.02 2.11 16 29 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.42 8.10 -2.38 -0.02 1.40 16 32 H 0.08 2.11 7.56 -2.39 -0.02 2.09 16 33 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.05 1.48 7.36 -2.39 -0.02 1.46 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -66.32 298.77 2.57 -63.75 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.63 Total: 19.73 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 2.57 Total: -48.85 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.67 Total: -88.18 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -66.32 2.57 -63.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393657763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.276 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds