Wall clock time and date at job start Mon Mar 30 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48499 * 109.46964 * 269.99515 * 3 2 1 5 5 H 1.48496 * 109.47036 * 29.99788 * 3 2 1 6 6 H 1.48505 * 109.46695 * 149.99667 * 3 2 1 7 7 C 1.37877 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99339 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00492 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46743 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46743 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46910 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99703 * 179.97438 * 13 12 11 15 15 H 1.09004 * 110.81772 * 31.67158 * 14 13 12 16 16 C 1.54882 * 110.75970 * 268.33042 * 14 13 12 17 17 C 1.54268 * 104.19992 * 203.74434 * 16 14 13 18 18 H 1.08999 * 117.76379 * 163.96731 * 17 16 14 19 19 C 1.53004 * 118.19758 * 319.43479 * 17 16 14 20 20 C 1.52997 * 60.37921 * 93.61238 * 19 17 16 21 21 H 1.09005 * 119.75678 * 111.12556 * 20 19 17 22 22 C 1.54268 * 118.20099 * 266.38227 * 20 19 17 23 23 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46770 * 59.99335 * 9 7 2 25 25 H 1.09005 * 109.46875 * 300.00120 * 9 7 2 26 26 H 1.08999 * 109.46875 * 60.00393 * 10 9 7 27 27 H 1.08995 * 109.47037 * 300.00042 * 10 9 7 28 28 H 1.08992 * 109.46918 * 60.00201 * 11 10 9 29 29 H 1.09003 * 109.47153 * 299.99821 * 11 10 9 30 30 H 1.09006 * 109.47023 * 59.99863 * 12 11 10 31 31 H 1.08998 * 109.47453 * 300.00489 * 12 11 10 32 32 H 1.00895 * 110.99980 * 56.05101 * 13 12 11 33 33 H 1.09003 * 110.48391 * 322.42181 * 16 14 13 34 34 H 1.09004 * 110.48801 * 85.06723 * 16 14 13 35 35 H 1.08998 * 117.46070 * 346.01118 * 19 17 16 36 36 H 1.08996 * 117.45748 * 201.21088 * 19 17 16 37 37 H 1.08999 * 110.49069 * 281.89696 * 22 20 19 38 38 H 1.08999 * 110.60474 * 159.30523 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7400 -7.4222 0.0031 14 6 2.6644 -8.5638 0.0031 15 1 3.5825 -8.3188 0.5373 16 6 2.9762 -9.0178 -1.4445 17 6 3.4015 -10.4932 -1.2951 18 1 3.4158 -11.1109 -2.1930 19 6 4.2938 -10.8720 -0.1113 20 6 2.7745 -11.0008 0.0153 21 1 2.3189 -11.9889 0.0802 22 6 1.9901 -9.8162 0.6164 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 3.1011 -6.0918 0.8918 31 1 3.1013 -6.0927 -0.8881 32 1 1.1034 -7.4729 -0.7781 33 1 2.0863 -8.9387 -2.0690 34 1 3.7908 -8.4265 -1.8627 35 1 4.7768 -10.0611 0.4338 36 1 4.8713 -11.7929 -0.1918 37 1 2.0851 -9.8073 1.7022 38 1 0.9405 -9.8647 0.3266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397739319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:51 Heat of formation + Delta-G solvation = -3.802395 kcal Electronic energy + Delta-G solvation = -14695.933330 eV Core-core repulsion = 12344.655291 eV Total energy + Delta-G solvation = -2351.278039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97374 -36.27946 -34.03765 -32.20500 -29.88031 -28.41213 -27.35419 -24.30543 -22.85906 -21.42881 -20.16153 -19.91754 -19.48750 -16.53560 -16.16355 -15.82768 -14.97558 -14.43893 -13.88971 -13.82396 -13.40600 -13.36906 -12.82073 -12.38123 -11.85080 -11.79314 -11.61044 -11.49288 -11.27848 -10.97743 -10.85779 -10.54007 -10.44948 -10.38951 -10.30843 -9.76143 -9.60223 -9.22749 -8.97542 -8.32177 -8.29399 -5.95687 -3.97852 3.34173 3.40143 3.43822 3.45996 4.06947 4.33573 4.47458 4.50568 4.74664 4.90043 5.04852 5.20724 5.33090 5.36696 5.39639 5.44694 5.57237 5.59374 5.67047 5.72497 5.88368 5.93396 5.97411 6.02504 6.07414 6.20571 6.31429 6.54407 6.85774 6.99720 7.09364 7.26731 7.45056 7.73547 7.89688 8.05644 8.48482 9.09729 9.65873 11.15688 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.078437 B = 0.003594 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.886877 B = 7789.734172 C = 7941.045884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.682 5.682 14 C 0.078 3.922 15 H 0.083 0.917 16 C -0.125 4.125 17 C -0.167 4.167 18 H 0.107 0.893 19 C -0.156 4.156 20 C -0.167 4.167 21 H 0.109 0.891 22 C -0.084 4.084 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 -20.989 -1.361 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.312 5.312 14 C -0.032 4.032 15 H 0.101 0.899 16 C -0.164 4.164 17 C -0.186 4.186 18 H 0.125 0.875 19 C -0.193 4.193 20 C -0.186 4.186 21 H 0.127 0.873 22 C -0.122 4.122 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.518 -20.845 -0.665 21.573 hybrid contribution 0.773 0.904 -1.043 1.583 sum 6.292 -19.940 -1.709 20.979 Atomic orbital electron populations 1.69975 1.06043 1.26500 1.51067 1.25040 0.94852 0.99233 0.95445 0.86607 0.79863 0.83556 0.78051 1.20716 1.21230 1.19893 1.21298 0.93019 0.91240 1.50277 0.92782 1.19093 0.94033 0.91342 0.97153 1.21590 0.99081 0.93987 1.00054 1.21643 0.97896 0.93876 1.01976 1.22106 0.96242 0.88536 1.00039 1.60519 1.19237 1.01492 1.49912 1.22587 0.95383 0.90937 0.94341 0.89908 1.22662 1.01189 0.94076 0.98498 1.23035 1.05528 0.97160 0.92839 0.87522 1.22917 0.92547 1.02863 1.00955 1.23168 0.94542 0.99641 1.01214 0.87342 1.21883 0.99044 0.91172 1.00096 0.93060 0.96753 0.96587 0.93460 0.93701 0.92770 0.91652 0.91358 0.95550 0.84088 0.90763 0.91581 0.88933 0.88487 0.91223 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.02 5.48 -26.73 -0.15 -2.17 16 12 C 0.06 0.86 5.55 -3.82 -0.02 0.84 16 13 N -0.68 -8.65 6.39 -104.62 -0.67 -9.32 16 14 C 0.08 0.85 2.75 -65.72 -0.18 0.67 16 15 H 0.08 0.94 7.07 -51.93 -0.37 0.58 16 16 C -0.13 -1.24 6.34 -25.07 -0.16 -1.40 16 17 C -0.17 -1.49 7.06 -89.50 -0.63 -2.12 16 18 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.16 -1.30 9.83 -26.73 -0.26 -1.56 16 20 C -0.17 -1.46 7.06 -89.50 -0.63 -2.09 16 21 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.08 -0.83 6.45 -25.07 -0.16 -0.99 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.34 4.07 8.20 -39.29 -0.32 3.75 16 33 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.80 7.21 -51.93 -0.37 0.43 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -30.14 305.98 -10.15 -40.29 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.92 Total: -1.04 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.88 Total: -24.76 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.07 Total: -36.10 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.14 -10.15 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.485 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds