Wall clock time and date at job start Mon Mar 30 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48499 * 109.46964 * 269.99515 * 3 2 1 5 5 H 1.48496 * 109.47036 * 29.99788 * 3 2 1 6 6 H 1.48505 * 109.46695 * 149.99667 * 3 2 1 7 7 C 1.37877 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99339 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00492 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46743 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46743 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46910 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99703 * 179.97438 * 13 12 11 15 15 H 1.09004 * 110.81772 * 31.67158 * 14 13 12 16 16 C 1.54882 * 110.75970 * 268.33042 * 14 13 12 17 17 C 1.54268 * 104.19992 * 203.74434 * 16 14 13 18 18 H 1.08999 * 117.76379 * 163.96731 * 17 16 14 19 19 C 1.53004 * 118.19758 * 319.43479 * 17 16 14 20 20 C 1.52997 * 60.37921 * 93.61238 * 19 17 16 21 21 H 1.09005 * 119.75678 * 111.12556 * 20 19 17 22 22 C 1.54268 * 118.20099 * 266.38227 * 20 19 17 23 23 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46770 * 59.99335 * 9 7 2 25 25 H 1.09005 * 109.46875 * 300.00120 * 9 7 2 26 26 H 1.08999 * 109.46875 * 60.00393 * 10 9 7 27 27 H 1.08995 * 109.47037 * 300.00042 * 10 9 7 28 28 H 1.08992 * 109.46918 * 60.00201 * 11 10 9 29 29 H 1.09003 * 109.47153 * 299.99821 * 11 10 9 30 30 H 1.09006 * 109.47023 * 59.99863 * 12 11 10 31 31 H 1.08998 * 109.47453 * 300.00489 * 12 11 10 32 32 H 1.00895 * 110.99980 * 56.05101 * 13 12 11 33 33 H 1.09003 * 110.48391 * 322.42181 * 16 14 13 34 34 H 1.09004 * 110.48801 * 85.06723 * 16 14 13 35 35 H 1.08998 * 117.46070 * 346.01118 * 19 17 16 36 36 H 1.08996 * 117.45748 * 201.21088 * 19 17 16 37 37 H 1.08999 * 110.49069 * 281.89696 * 22 20 19 38 38 H 1.08999 * 110.60474 * 159.30523 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 7 1.7400 -7.4222 0.0031 14 6 2.6644 -8.5638 0.0031 15 1 3.5825 -8.3188 0.5373 16 6 2.9762 -9.0178 -1.4445 17 6 3.4015 -10.4932 -1.2951 18 1 3.4158 -11.1109 -2.1930 19 6 4.2938 -10.8720 -0.1113 20 6 2.7745 -11.0008 0.0153 21 1 2.3189 -11.9889 0.0802 22 6 1.9901 -9.8162 0.6164 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 3.1011 -6.0918 0.8918 31 1 3.1013 -6.0927 -0.8881 32 1 1.1034 -7.4729 -0.7781 33 1 2.0863 -8.9387 -2.0690 34 1 3.7908 -8.4265 -1.8627 35 1 4.7768 -10.0611 0.4338 36 1 4.8713 -11.7929 -0.1918 37 1 2.0851 -9.8073 1.7022 38 1 0.9405 -9.8647 0.3266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397739319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:51 Heat of formation + Delta-G solvation = -20.856112 kcal Electronic energy + Delta-G solvation = -14696.672835 eV Core-core repulsion = 12344.655291 eV Total energy + Delta-G solvation = -2352.017544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73628 -37.54327 -35.74989 -34.02981 -31.22148 -29.18711 -28.86448 -26.04981 -23.74826 -22.94561 -21.79867 -20.65320 -20.35976 -18.43540 -17.26543 -16.91835 -16.50003 -16.24118 -15.02772 -14.74260 -14.55237 -14.35551 -14.19156 -13.96782 -13.51221 -13.19913 -12.86285 -12.68250 -12.45330 -12.26790 -12.23414 -12.14818 -12.06593 -11.70557 -11.38206 -11.29932 -10.99436 -10.93897 -10.55537 -10.45808 -9.31267 -8.20063 -6.31719 1.39430 1.41325 1.52570 2.40887 2.78633 3.12528 3.12846 3.56993 3.71895 4.05070 4.08357 4.15041 4.27127 4.30357 4.44949 4.52569 4.57547 4.64808 4.68039 4.81767 4.89885 4.91387 4.95067 4.99156 5.16338 5.21294 5.25157 5.29608 5.30464 5.36005 5.36951 5.54889 5.77700 5.86685 6.12703 6.25678 6.46405 6.85892 7.37639 8.91884 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.078437 B = 0.003594 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.886877 B = 7789.734172 C = 7941.045884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.072 3.928 13 N -0.688 5.688 14 C 0.077 3.923 15 H 0.078 0.922 16 C -0.123 4.123 17 C -0.171 4.171 18 H 0.117 0.883 19 C -0.154 4.154 20 C -0.168 4.168 21 H 0.121 0.879 22 C -0.083 4.083 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.345 0.655 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -21.696 -1.618 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.057 4.057 13 N -0.318 5.318 14 C -0.033 4.033 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.190 4.190 18 H 0.135 0.865 19 C -0.190 4.190 20 C -0.186 4.186 21 H 0.139 0.861 22 C -0.121 4.121 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.903 -21.574 -0.924 22.670 hybrid contribution 0.302 1.104 -0.955 1.491 sum 7.206 -20.470 -1.880 21.782 Atomic orbital electron populations 1.70111 1.07865 1.27786 1.51741 1.26037 0.95818 1.03519 0.94716 0.85419 0.78652 0.78257 0.78552 1.19663 1.20663 1.18682 1.21754 0.93580 0.92553 1.50487 0.92195 1.19023 0.94511 0.93290 0.94620 1.21401 0.97991 0.93717 1.00425 1.21469 0.98053 0.93352 1.01494 1.21863 0.95277 0.88201 1.00353 1.60474 1.19647 1.01280 1.50363 1.22605 0.94916 0.90535 0.95241 0.90377 1.22607 1.01136 0.94867 0.97599 1.23080 1.05980 0.96485 0.93432 0.86466 1.23009 0.92375 1.03400 1.00251 1.23194 0.94845 0.99654 1.00902 0.86098 1.21848 0.99087 0.91256 0.99886 0.92756 0.99192 0.99262 0.93145 0.93102 0.92778 0.92663 0.91343 0.94929 0.83605 0.90618 0.92026 0.89472 0.86860 0.91586 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.10 5.15 30.60 0.16 -3.94 16 11 C -0.11 -3.66 5.48 30.60 0.17 -3.49 16 12 C 0.07 2.00 5.55 86.30 0.48 2.48 16 13 N -0.69 -16.73 6.39 -484.92 -3.10 -19.83 16 14 C 0.08 1.58 2.75 46.21 0.13 1.71 16 15 H 0.08 1.69 7.07 -2.38 -0.02 1.67 16 16 C -0.12 -2.25 6.34 31.67 0.20 -2.05 16 17 C -0.17 -2.70 7.06 -10.07 -0.07 -2.77 16 18 H 0.12 1.61 8.14 -2.39 -0.02 1.60 16 19 C -0.15 -2.23 9.83 30.59 0.30 -1.93 16 20 C -0.17 -2.60 7.06 -10.07 -0.07 -2.67 16 21 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 22 C -0.08 -1.53 6.45 31.67 0.20 -1.32 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 25 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.91 8.08 -2.38 -0.02 1.89 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.35 7.89 8.20 -89.70 -0.74 7.15 16 33 H 0.08 1.36 7.77 -2.39 -0.02 1.34 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.37 7.21 -2.39 -0.02 1.35 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.12 305.98 1.82 -62.30 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.27 Total: 12.59 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 2.34 Total: -44.12 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.81 Total: -77.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.12 1.82 -62.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.441 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds