Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00435 * 2 1 4 4 H 1.48499 * 109.47525 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46815 * 299.99602 * 3 2 1 6 6 H 1.48501 * 109.47300 * 59.99506 * 3 2 1 7 7 C 1.37879 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00248 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47442 * 174.70817 * 9 7 2 11 11 C 1.46898 * 111.00166 * 162.30064 * 10 9 7 12 12 C 1.53005 * 109.47345 * 190.00277 * 11 10 9 13 13 C 1.53000 * 109.46868 * 180.02562 * 12 11 10 14 14 C 1.53783 * 113.61381 * 274.13307 * 13 12 11 15 15 C 1.53956 * 87.01928 * 220.05588 * 14 13 12 16 16 C 1.53778 * 87.11517 * 25.36116 * 15 14 13 17 17 C 1.46900 * 111.00308 * 286.25706 * 10 9 7 18 18 C 1.52994 * 117.50110 * 142.06981 * 17 10 9 19 19 C 1.52999 * 117.50062 * 73.40919 * 17 10 9 20 20 H 0.96997 * 119.99342 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47472 * 294.71374 * 9 7 2 22 22 H 1.09012 * 109.46667 * 54.71142 * 9 7 2 23 23 H 1.09006 * 109.47165 * 310.00140 * 11 10 9 24 24 H 1.08997 * 109.47130 * 70.00348 * 11 10 9 25 25 H 1.08996 * 109.46967 * 300.00037 * 12 11 10 26 26 H 1.08997 * 109.46949 * 59.99960 * 12 11 10 27 27 H 1.08993 * 112.85281 * 45.33451 * 13 12 11 28 28 H 1.09004 * 113.61335 * 334.57360 * 14 13 12 29 29 H 1.08995 * 113.61235 * 105.47677 * 14 13 12 30 30 H 1.09006 * 113.53304 * 270.81249 * 15 14 13 31 31 H 1.08999 * 113.66682 * 139.94151 * 15 14 13 32 32 H 1.09001 * 113.61715 * 220.09168 * 16 15 14 33 33 H 1.09007 * 113.68703 * 89.19588 * 16 15 14 34 34 H 1.09000 * 115.54644 * 287.73651 * 17 10 9 35 35 H 1.08996 * 117.50096 * 0.02562 * 18 17 10 36 36 H 1.09005 * 117.49928 * 145.02286 * 18 17 10 37 37 H 1.09004 * 117.49622 * 214.98412 * 19 17 10 38 38 H 1.08993 * 117.49714 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2005 -3.6128 -0.1266 11 6 1.5825 -4.8809 0.2830 12 6 2.6576 -5.9655 0.3769 13 6 2.0137 -7.2864 0.8029 14 6 1.8789 -7.4427 2.3268 15 6 2.2837 -8.9151 2.1307 16 6 2.9990 -8.4664 0.8455 17 6 2.7275 -3.7018 -1.4949 18 6 4.2009 -4.0787 -1.6613 19 6 3.7426 -2.6434 -1.9313 20 1 -0.4849 0.8401 -0.0004 21 1 0.6969 -2.5988 0.9338 22 1 0.5555 -2.5171 -0.8387 23 1 1.1067 -4.7558 1.2558 24 1 0.8336 -5.1744 -0.4526 25 1 3.1333 -6.0906 -0.5958 26 1 3.4065 -5.6720 1.1125 27 1 1.0949 -7.5043 0.2586 28 1 2.6075 -6.8610 2.8915 29 1 0.8595 -7.3139 2.6904 30 1 1.4379 -9.5788 1.9507 31 1 2.9602 -9.2889 2.8993 32 1 2.8825 -9.1628 0.0151 33 1 4.0346 -8.1650 1.0031 34 1 2.0267 -4.0669 -2.2457 35 1 4.7792 -4.2611 -0.7556 36 1 4.4696 -4.6914 -2.5220 37 1 3.7097 -2.3124 -2.9693 38 1 4.0189 -1.8809 -1.2032 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398639796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = 37.524549 kcal Electronic energy + Delta-G solvation = -15517.470392 eV Core-core repulsion = 13167.984423 eV Total energy + Delta-G solvation = -2349.485969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.92762 -37.49005 -33.70007 -32.63435 -30.29193 -26.70876 -25.54613 -24.01905 -22.18014 -21.59347 -21.17951 -19.47048 -19.08201 -16.46596 -15.50129 -14.95438 -14.83378 -14.69980 -14.30070 -13.51115 -13.02747 -12.77622 -12.36030 -12.18060 -12.11373 -11.61344 -11.36696 -11.01313 -10.85770 -10.73680 -10.70665 -10.52728 -10.40584 -10.12662 -9.99205 -9.70368 -9.43745 -9.05255 -9.00375 -8.36153 -7.21878 -5.96782 -3.96418 3.33460 3.40943 3.45264 4.44793 4.62649 4.68132 4.74327 4.80037 4.93961 5.00179 5.38289 5.58530 5.62056 5.70880 5.78203 5.80145 5.84155 5.85211 5.88346 5.96915 6.05604 6.19840 6.22250 6.23429 6.42195 6.43521 6.51747 6.69056 6.74262 6.78694 7.02819 7.29578 7.44827 7.92109 8.18208 8.28562 8.62441 9.10995 9.66519 11.14175 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037825 B = 0.006178 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.075700 B = 4530.940801 C = 4973.618784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.194 3.806 10 N -0.512 5.512 11 C 0.062 3.938 12 C -0.102 4.102 13 C -0.109 4.109 14 C -0.137 4.137 15 C -0.144 4.144 16 C -0.137 4.137 17 C 0.030 3.970 18 C -0.186 4.186 19 C -0.155 4.155 20 H 0.259 0.741 21 H 0.024 0.976 22 H -0.005 1.005 23 H 0.066 0.934 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -13.795 0.290 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.237 5.237 11 C -0.066 4.066 12 C -0.140 4.140 13 C -0.128 4.128 14 C -0.174 4.174 15 C -0.182 4.182 16 C -0.174 4.174 17 C -0.079 4.079 18 C -0.224 4.224 19 C -0.192 4.192 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.013 0.987 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.359 -13.566 0.615 14.599 hybrid contribution -0.478 0.816 -0.583 1.111 sum 4.881 -12.749 0.031 13.652 Atomic orbital electron populations 1.69973 1.06045 1.26447 1.51750 1.24991 0.94818 0.99193 0.95813 0.86505 0.80130 0.83758 0.77424 1.19648 1.21206 1.21155 1.21307 0.93617 0.89693 1.48846 0.91362 1.19708 0.89874 0.87522 0.95931 1.61912 1.38658 1.03339 1.19791 1.21990 0.94857 0.90251 0.99540 1.21570 0.98280 0.92493 1.01647 1.22542 0.98803 0.95175 0.96286 1.23002 1.01637 0.96054 0.96729 1.22846 1.00220 0.96985 0.98126 1.22924 0.99007 0.97899 0.97601 1.22009 0.90494 1.04138 0.91279 1.23029 0.98107 0.99340 1.01885 1.23067 1.02517 0.92347 1.01289 0.93144 0.95766 0.98682 0.91593 0.96400 0.91827 0.91586 0.89805 0.90005 0.91807 0.90655 0.91914 0.92056 0.90221 0.91651 0.89048 0.90361 0.90228 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.50 -13.86 8.04 -34.44 -0.28 -14.14 16 8 H 0.07 1.88 5.49 -52.48 -0.29 1.59 16 9 C 0.19 5.13 4.75 -4.98 -0.02 5.11 16 10 N -0.51 -11.21 4.58 -228.09 -1.04 -12.25 16 11 C 0.06 1.14 4.94 -3.82 -0.02 1.13 16 12 C -0.10 -1.53 4.79 -26.73 -0.13 -1.66 16 13 C -0.11 -1.37 3.64 -89.80 -0.33 -1.69 16 14 C -0.14 -1.61 7.65 -25.83 -0.20 -1.81 16 15 C -0.14 -1.46 8.09 -25.83 -0.21 -1.67 16 16 C -0.14 -1.47 7.65 -25.92 -0.20 -1.67 16 17 C 0.03 0.60 4.27 -67.72 -0.29 0.31 16 18 C -0.19 -3.11 8.92 -26.70 -0.24 -3.35 16 19 C -0.16 -3.01 9.40 -26.70 -0.25 -3.26 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.02 0.68 7.77 -51.93 -0.40 0.28 16 22 H 0.00 -0.14 8.03 -51.92 -0.42 -0.55 16 23 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 24 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 25 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 26 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.11 2.46 5.63 -51.93 -0.29 2.17 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -29.13 301.05 -9.79 -38.92 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.74 Total: -0.30 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.25 Total: -21.32 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.31 Total: -38.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.13 -9.79 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398639796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.444 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds