Wall clock time and date at job start Mon Mar 30 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00435 * 2 1 4 4 H 1.48499 * 109.47525 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46815 * 299.99602 * 3 2 1 6 6 H 1.48501 * 109.47300 * 59.99506 * 3 2 1 7 7 C 1.37879 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00248 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47442 * 174.70817 * 9 7 2 11 11 C 1.46898 * 111.00166 * 162.30064 * 10 9 7 12 12 C 1.53005 * 109.47345 * 190.00277 * 11 10 9 13 13 C 1.53000 * 109.46868 * 180.02562 * 12 11 10 14 14 C 1.53783 * 113.61381 * 274.13307 * 13 12 11 15 15 C 1.53956 * 87.01928 * 220.05588 * 14 13 12 16 16 C 1.53778 * 87.11517 * 25.36116 * 15 14 13 17 17 C 1.46900 * 111.00308 * 286.25706 * 10 9 7 18 18 C 1.52994 * 117.50110 * 142.06981 * 17 10 9 19 19 C 1.52999 * 117.50062 * 73.40919 * 17 10 9 20 20 H 0.96997 * 119.99342 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47472 * 294.71374 * 9 7 2 22 22 H 1.09012 * 109.46667 * 54.71142 * 9 7 2 23 23 H 1.09006 * 109.47165 * 310.00140 * 11 10 9 24 24 H 1.08997 * 109.47130 * 70.00348 * 11 10 9 25 25 H 1.08996 * 109.46967 * 300.00037 * 12 11 10 26 26 H 1.08997 * 109.46949 * 59.99960 * 12 11 10 27 27 H 1.08993 * 112.85281 * 45.33451 * 13 12 11 28 28 H 1.09004 * 113.61335 * 334.57360 * 14 13 12 29 29 H 1.08995 * 113.61235 * 105.47677 * 14 13 12 30 30 H 1.09006 * 113.53304 * 270.81249 * 15 14 13 31 31 H 1.08999 * 113.66682 * 139.94151 * 15 14 13 32 32 H 1.09001 * 113.61715 * 220.09168 * 16 15 14 33 33 H 1.09007 * 113.68703 * 89.19588 * 16 15 14 34 34 H 1.09000 * 115.54644 * 287.73651 * 17 10 9 35 35 H 1.08996 * 117.50096 * 0.02562 * 18 17 10 36 36 H 1.09005 * 117.49928 * 145.02286 * 18 17 10 37 37 H 1.09004 * 117.49622 * 214.98412 * 19 17 10 38 38 H 1.08993 * 117.49714 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2005 -3.6128 -0.1266 11 6 1.5825 -4.8809 0.2830 12 6 2.6576 -5.9655 0.3769 13 6 2.0137 -7.2864 0.8029 14 6 1.8789 -7.4427 2.3268 15 6 2.2837 -8.9151 2.1307 16 6 2.9990 -8.4664 0.8455 17 6 2.7275 -3.7018 -1.4949 18 6 4.2009 -4.0787 -1.6613 19 6 3.7426 -2.6434 -1.9313 20 1 -0.4849 0.8401 -0.0004 21 1 0.6969 -2.5988 0.9338 22 1 0.5555 -2.5171 -0.8387 23 1 1.1067 -4.7558 1.2558 24 1 0.8336 -5.1744 -0.4526 25 1 3.1333 -6.0906 -0.5958 26 1 3.4065 -5.6720 1.1125 27 1 1.0949 -7.5043 0.2586 28 1 2.6075 -6.8610 2.8915 29 1 0.8595 -7.3139 2.6904 30 1 1.4379 -9.5788 1.9507 31 1 2.9602 -9.2889 2.8993 32 1 2.8825 -9.1628 0.0151 33 1 4.0346 -8.1650 1.0031 34 1 2.0267 -4.0669 -2.2457 35 1 4.7792 -4.2611 -0.7556 36 1 4.4696 -4.6914 -2.5220 37 1 3.7097 -2.3124 -2.9693 38 1 4.0189 -1.8809 -1.2032 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398639796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:28 Heat of formation + Delta-G solvation = 21.321462 kcal Electronic energy + Delta-G solvation = -15518.173011 eV Core-core repulsion = 13167.984423 eV Total energy + Delta-G solvation = -2350.188587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03653 -38.96388 -35.39817 -34.59682 -31.86199 -28.60549 -26.45170 -25.38369 -24.10610 -23.07044 -22.48367 -21.01153 -20.13046 -18.54722 -16.76703 -16.53704 -16.43023 -16.15514 -15.74390 -14.91664 -14.56651 -14.40279 -13.90838 -13.63650 -13.24367 -13.17540 -12.86037 -12.74948 -12.60732 -12.39156 -12.09761 -11.90184 -11.82158 -11.35447 -11.25416 -11.09916 -10.94309 -10.77626 -10.59185 -10.52939 -9.03008 -8.16145 -6.24140 1.40930 1.41529 1.54883 2.41847 3.06295 3.16050 3.25064 3.75899 3.84764 3.94868 4.04251 4.19577 4.27866 4.32477 4.43633 4.55320 4.70294 4.79531 4.86671 4.89705 4.91303 4.95513 5.00020 5.09212 5.11644 5.13747 5.20577 5.28348 5.34562 5.41402 5.49310 5.51446 5.72116 5.78439 6.11419 6.43510 6.68088 6.92317 7.44245 8.95323 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037825 B = 0.006178 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.075700 B = 4530.940801 C = 4973.618784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.209 3.791 10 N -0.517 5.517 11 C 0.062 3.938 12 C -0.086 4.086 13 C -0.114 4.114 14 C -0.144 4.144 15 C -0.135 4.135 16 C -0.129 4.129 17 C 0.002 3.998 18 C -0.141 4.141 19 C -0.170 4.170 20 H 0.262 0.738 21 H -0.004 1.004 22 H -0.039 1.039 23 H 0.053 0.947 24 H 0.013 0.987 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -14.903 -0.110 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.543 4.543 8 H 0.090 0.910 9 C 0.083 3.917 10 N -0.241 5.241 11 C -0.066 4.066 12 C -0.124 4.124 13 C -0.133 4.133 14 C -0.181 4.181 15 C -0.172 4.172 16 C -0.167 4.167 17 C -0.107 4.107 18 C -0.178 4.178 19 C -0.207 4.207 20 H 0.070 0.930 21 H 0.014 0.986 22 H -0.022 1.022 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.343 -14.699 0.215 16.432 hybrid contribution -1.126 1.125 -0.462 1.657 sum 6.217 -13.574 -0.247 14.932 Atomic orbital electron populations 1.70111 1.07810 1.27533 1.52780 1.25905 0.95647 1.03093 0.95302 0.85391 0.79195 0.78897 0.77516 1.18426 1.20625 1.20709 1.21597 0.93863 0.90463 1.48394 0.91016 1.19369 0.89870 0.89485 0.93009 1.61874 1.37275 1.03436 1.21497 1.22078 0.96075 0.89948 0.98515 1.21432 0.96877 0.92316 1.01791 1.22563 0.99390 0.94564 0.96779 1.23040 1.01383 0.97671 0.96042 1.22817 1.00609 0.95730 0.98041 1.22896 0.98601 0.96827 0.98345 1.22124 0.92236 1.06233 0.90089 1.23065 0.94486 0.97206 1.03081 1.23041 1.03115 0.93159 1.01394 0.92969 0.98593 1.02154 0.92853 0.96840 0.91351 0.92093 0.89886 0.90570 0.92220 0.89687 0.90751 0.90871 0.89885 0.91896 0.88692 0.86805 0.88790 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.50 -28.86 8.04 25.60 0.21 -28.65 16 8 H 0.07 3.99 5.49 -2.91 -0.02 3.98 16 9 C 0.21 11.53 4.75 85.56 0.41 11.94 16 10 N -0.52 -23.05 4.58 -875.54 -4.01 -27.06 16 11 C 0.06 2.33 4.94 86.31 0.43 2.75 16 12 C -0.09 -2.50 4.79 30.60 0.15 -2.35 16 13 C -0.11 -2.69 3.64 -10.26 -0.04 -2.73 16 14 C -0.14 -3.22 7.65 31.18 0.24 -2.98 16 15 C -0.13 -2.38 8.09 31.18 0.25 -2.13 16 16 C -0.13 -2.43 7.65 31.12 0.24 -2.19 16 17 C 0.00 0.09 4.27 44.91 0.19 0.28 16 18 C -0.14 -4.33 8.92 30.62 0.27 -4.06 16 19 C -0.17 -6.42 9.40 30.62 0.29 -6.13 16 20 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 21 H 0.00 -0.24 7.77 -2.39 -0.02 -0.26 16 22 H -0.04 -2.40 8.03 -2.38 -0.02 -2.41 16 23 H 0.05 2.10 7.85 -2.38 -0.02 2.08 16 24 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 25 H 0.07 1.91 6.38 -2.39 -0.02 1.89 16 26 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 1.78 7.92 -2.38 -0.02 1.76 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.09 3.78 5.63 -2.39 -0.01 3.76 16 Total: -1.00 -63.81 301.05 2.39 -61.42 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.00 Total: 12.26 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.09 Total: -35.94 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -3.72 Total: -84.72 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.81 2.39 -61.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398639796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.742 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds