Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00354 * 2 1 4 4 H 1.48495 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47037 * 300.00125 * 3 2 1 6 6 H 1.48507 * 109.46746 * 59.99667 * 3 2 1 7 7 C 1.37883 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99434 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.64553 * 59.30326 * 9 7 2 11 11 C 1.54596 * 110.72957 * 296.14798 * 9 7 2 12 12 C 1.53991 * 105.13862 * 219.51054 * 11 9 7 13 13 N 1.47896 * 107.06409 * 358.77166 * 12 11 9 14 14 C 1.46891 * 111.00170 * 145.84397 * 13 12 11 15 15 C 1.53000 * 109.47258 * 184.29530 * 14 13 12 16 16 C 1.53002 * 109.47384 * 185.14605 * 15 14 13 17 17 C 1.53778 * 113.61490 * 274.13524 * 16 15 14 18 18 C 1.53958 * 87.01977 * 220.04539 * 17 16 15 19 19 C 1.53783 * 87.11152 * 25.36281 * 18 17 16 20 20 C 1.49015 * 105.86852 * 25.33709 * 13 12 11 21 21 H 0.97005 * 119.99343 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.30719 * 338.42352 * 11 9 7 23 23 H 1.08995 * 110.31115 * 100.48949 * 11 9 7 24 24 H 1.09008 * 109.91609 * 118.13077 * 12 11 9 25 25 H 1.09003 * 109.91636 * 239.21949 * 12 11 9 26 26 H 1.08998 * 109.47491 * 304.29559 * 14 13 12 27 27 H 1.09000 * 109.47356 * 64.29383 * 14 13 12 28 28 H 1.09005 * 109.46872 * 305.14254 * 15 14 13 29 29 H 1.08995 * 109.47511 * 65.14269 * 15 14 13 30 30 H 1.08998 * 112.84837 * 45.33346 * 16 15 14 31 31 H 1.08995 * 113.61112 * 334.56443 * 17 16 15 32 32 H 1.08999 * 113.61401 * 105.46997 * 17 16 15 33 33 H 1.08991 * 113.53828 * 270.81226 * 18 17 16 34 34 H 1.09002 * 113.66547 * 139.93086 * 18 17 16 35 35 H 1.09000 * 113.61741 * 220.09280 * 19 18 17 36 36 H 1.09005 * 113.61451 * 89.18427 * 19 18 17 37 37 H 1.09000 * 110.85831 * 202.43019 * 20 13 12 38 38 H 1.08992 * 110.68405 * 79.14883 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6083 -2.5717 -0.8768 11 6 0.4251 -2.6540 1.2981 12 6 0.5639 -4.1372 1.6886 13 7 1.3953 -4.7833 0.6500 14 6 2.2364 -5.8386 1.2301 15 6 3.1567 -6.4093 0.1493 16 6 3.9406 -7.5930 0.7196 17 6 5.2317 -7.1834 1.4476 18 6 5.8933 -8.4116 0.7964 19 6 4.8367 -8.2944 -0.3148 20 6 2.2307 -3.6979 0.0631 21 1 -0.4849 0.8401 -0.0004 22 1 0.8312 -2.0165 2.0835 23 1 -0.6201 -2.4061 1.1133 24 1 1.0513 -4.2214 2.6600 25 1 -0.4199 -4.6052 1.7252 26 1 2.8388 -5.4209 2.0368 27 1 1.6025 -6.6331 1.6241 28 1 2.5580 -6.7444 -0.6978 29 1 3.8524 -5.6376 -0.1801 30 1 3.3154 -8.2784 1.2918 31 1 5.6429 -6.2335 1.1060 32 1 5.1604 -7.2490 2.5333 33 1 5.8029 -9.3209 1.3905 34 1 6.9112 -8.2292 0.4520 35 1 4.4468 -9.2555 -0.6499 36 1 5.1397 -7.6487 -1.1391 37 1 2.5723 -3.9681 -0.9361 38 1 3.0766 -3.4699 0.7115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398804035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = 2.960223 kcal Electronic energy + Delta-G solvation = -15450.647967 eV Core-core repulsion = 13099.663176 eV Total energy + Delta-G solvation = -2350.984790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.07859 -37.74727 -33.50706 -31.74314 -28.97194 -27.87930 -25.66355 -24.97198 -23.70563 -21.37576 -19.85922 -19.53171 -19.10279 -16.33059 -15.71650 -15.23080 -14.75629 -14.46105 -14.14201 -13.71768 -13.13520 -12.61439 -12.45821 -12.29229 -12.03533 -11.68711 -11.37458 -11.04990 -10.88269 -10.86568 -10.60000 -10.56317 -10.43403 -10.22452 -10.03326 -9.82204 -9.61017 -9.16012 -8.73167 -8.37449 -7.67077 -5.99871 -4.02958 3.30229 3.38312 3.42060 4.43296 4.52925 4.64319 4.68874 4.82008 4.94413 5.32683 5.35221 5.55545 5.63530 5.71171 5.74571 5.77243 5.84219 5.89551 5.94512 6.00017 6.13151 6.16973 6.28280 6.36370 6.46317 6.53179 6.58747 6.61778 6.90978 7.18587 7.21521 7.63281 7.70548 7.80869 7.92739 8.07253 8.48069 9.00140 9.61158 11.10132 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.005639 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.351166 B = 4964.467485 C = 5405.290058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.037 0.963 11 C -0.103 4.103 12 C 0.034 3.966 13 N -0.524 5.524 14 C 0.051 3.949 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.137 4.137 20 C 0.043 3.957 21 H 0.259 0.741 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 -13.623 2.404 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.055 0.945 11 C -0.142 4.142 12 C -0.093 4.093 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.127 4.127 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.174 4.174 20 C -0.084 4.084 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.646 -13.759 2.018 15.413 hybrid contribution 0.910 1.300 0.770 1.764 sum 7.556 -12.459 2.788 14.836 Atomic orbital electron populations 1.69993 1.05876 1.26329 1.50390 1.24972 0.94822 0.98989 0.95080 0.86585 0.80160 0.83986 0.77562 1.19824 1.20997 1.21094 1.21144 0.92788 0.90454 1.50973 0.92648 1.19546 0.92342 0.90975 0.93985 0.94513 1.22328 1.01397 0.90539 0.99942 1.22932 0.96726 0.97329 0.92354 1.64895 1.20620 1.10698 1.28641 1.22196 0.94614 0.95296 0.95687 1.21573 0.97862 0.96419 0.98535 1.22531 0.95139 0.97538 0.97477 1.23018 0.96754 0.98181 0.99649 1.22842 0.98384 0.98571 0.98344 1.22931 0.97027 1.00518 0.96969 1.23424 0.95777 0.91630 0.97602 0.93120 0.92898 0.92177 0.95593 0.92162 0.95558 0.91954 0.91199 0.91752 0.89574 0.90074 0.91869 0.90568 0.91784 0.91821 0.90096 0.91957 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 12.61 55.43 0.70 -25.08 16 2 C 0.06 1.77 5.35 -17.82 -0.10 1.67 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.30 8.40 -34.44 -0.29 -14.59 16 8 H 0.06 1.52 7.78 -52.49 -0.41 1.11 16 9 C 0.05 1.30 2.93 -89.91 -0.26 1.03 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.10 -2.49 5.65 -25.38 -0.14 -2.63 16 12 C 0.03 0.70 6.70 -2.76 -0.02 0.68 16 13 N -0.52 -10.33 5.36 -230.04 -1.23 -11.57 16 14 C 0.05 0.82 4.84 -3.83 -0.02 0.80 16 15 C -0.11 -1.49 4.72 -26.73 -0.13 -1.62 16 16 C -0.11 -1.23 3.64 -89.81 -0.33 -1.56 16 17 C -0.14 -1.51 7.65 -25.83 -0.20 -1.71 16 18 C -0.14 -1.36 8.09 -25.82 -0.21 -1.57 16 19 C -0.14 -1.39 7.65 -25.92 -0.20 -1.59 16 20 C 0.04 0.93 4.80 -1.62 -0.01 0.92 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 23 H 0.06 1.52 8.11 -51.93 -0.42 1.10 16 24 H 0.03 0.49 7.67 -51.92 -0.40 0.09 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.06 1.30 7.78 -51.93 -0.40 0.90 16 38 H 0.03 0.72 7.93 -51.93 -0.41 0.30 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -28.32 298.81 -9.94 -38.26 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.99 Total: -2.31 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -1.89 Total: -20.17 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.53 Total: -36.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.32 -9.94 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398804035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.216 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds