Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00354 * 2 1 4 4 H 1.48495 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47037 * 300.00125 * 3 2 1 6 6 H 1.48507 * 109.46746 * 59.99667 * 3 2 1 7 7 C 1.37883 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99434 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.64553 * 59.30326 * 9 7 2 11 11 C 1.54596 * 110.72957 * 296.14798 * 9 7 2 12 12 C 1.53991 * 105.13862 * 219.51054 * 11 9 7 13 13 N 1.47896 * 107.06409 * 358.77166 * 12 11 9 14 14 C 1.46891 * 111.00170 * 145.84397 * 13 12 11 15 15 C 1.53000 * 109.47258 * 184.29530 * 14 13 12 16 16 C 1.53002 * 109.47384 * 185.14605 * 15 14 13 17 17 C 1.53778 * 113.61490 * 274.13524 * 16 15 14 18 18 C 1.53958 * 87.01977 * 220.04539 * 17 16 15 19 19 C 1.53783 * 87.11152 * 25.36281 * 18 17 16 20 20 C 1.49015 * 105.86852 * 25.33709 * 13 12 11 21 21 H 0.97005 * 119.99343 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.30719 * 338.42352 * 11 9 7 23 23 H 1.08995 * 110.31115 * 100.48949 * 11 9 7 24 24 H 1.09008 * 109.91609 * 118.13077 * 12 11 9 25 25 H 1.09003 * 109.91636 * 239.21949 * 12 11 9 26 26 H 1.08998 * 109.47491 * 304.29559 * 14 13 12 27 27 H 1.09000 * 109.47356 * 64.29383 * 14 13 12 28 28 H 1.09005 * 109.46872 * 305.14254 * 15 14 13 29 29 H 1.08995 * 109.47511 * 65.14269 * 15 14 13 30 30 H 1.08998 * 112.84837 * 45.33346 * 16 15 14 31 31 H 1.08995 * 113.61112 * 334.56443 * 17 16 15 32 32 H 1.08999 * 113.61401 * 105.46997 * 17 16 15 33 33 H 1.08991 * 113.53828 * 270.81226 * 18 17 16 34 34 H 1.09002 * 113.66547 * 139.93086 * 18 17 16 35 35 H 1.09000 * 113.61741 * 220.09280 * 19 18 17 36 36 H 1.09005 * 113.61451 * 89.18427 * 19 18 17 37 37 H 1.09000 * 110.85831 * 202.43019 * 20 13 12 38 38 H 1.08992 * 110.68405 * 79.14883 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6083 -2.5717 -0.8768 11 6 0.4251 -2.6540 1.2981 12 6 0.5639 -4.1372 1.6886 13 7 1.3953 -4.7833 0.6500 14 6 2.2364 -5.8386 1.2301 15 6 3.1567 -6.4093 0.1493 16 6 3.9406 -7.5930 0.7196 17 6 5.2317 -7.1834 1.4476 18 6 5.8933 -8.4116 0.7964 19 6 4.8367 -8.2944 -0.3148 20 6 2.2307 -3.6979 0.0631 21 1 -0.4849 0.8401 -0.0004 22 1 0.8312 -2.0165 2.0835 23 1 -0.6201 -2.4061 1.1133 24 1 1.0513 -4.2214 2.6600 25 1 -0.4199 -4.6052 1.7252 26 1 2.8388 -5.4209 2.0368 27 1 1.6025 -6.6331 1.6241 28 1 2.5580 -6.7444 -0.6978 29 1 3.8524 -5.6376 -0.1801 30 1 3.3154 -8.2784 1.2918 31 1 5.6429 -6.2335 1.1060 32 1 5.1604 -7.2490 2.5333 33 1 5.8029 -9.3209 1.3905 34 1 6.9112 -8.2292 0.4520 35 1 4.4468 -9.2555 -0.6499 36 1 5.1397 -7.6487 -1.1391 37 1 2.5723 -3.9681 -0.9361 38 1 3.0766 -3.4699 0.7115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398804035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -12.818795 kcal Electronic energy + Delta-G solvation = -15451.332196 eV Core-core repulsion = 13099.663176 eV Total energy + Delta-G solvation = -2351.669020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17939 -39.21390 -35.35290 -33.42599 -30.65918 -29.54607 -26.85389 -26.42917 -25.06190 -22.72111 -21.54219 -21.11104 -20.17949 -18.40289 -16.93712 -16.71080 -16.31498 -15.91963 -15.61689 -15.03394 -14.63542 -14.19725 -13.73556 -13.69634 -13.28227 -13.08854 -12.95395 -12.82276 -12.56643 -12.46082 -12.21941 -11.99916 -11.67896 -11.55728 -11.36824 -11.11443 -10.95639 -10.87786 -10.81748 -10.51922 -9.26003 -8.14726 -6.25426 1.39638 1.41117 1.52869 2.41751 3.15152 3.20937 3.73497 3.79693 3.89882 4.02808 4.12568 4.19954 4.34077 4.49308 4.55045 4.61713 4.66659 4.73122 4.84044 4.90246 4.92670 4.94504 5.03705 5.07451 5.11851 5.19754 5.25153 5.30973 5.33609 5.48493 5.59318 5.69222 5.79464 5.85662 6.02293 6.31164 6.40108 6.84972 7.42639 8.95246 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.005639 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.351166 B = 4964.467485 C = 5405.290058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.040 3.960 10 H 0.001 0.999 11 C -0.095 4.095 12 C 0.043 3.957 13 N -0.530 5.530 14 C 0.051 3.949 15 C -0.100 4.100 16 C -0.107 4.107 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.136 4.136 20 C 0.059 3.941 21 H 0.261 0.739 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -14.827 3.010 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.020 0.980 11 C -0.134 4.134 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.077 4.077 15 C -0.138 4.138 16 C -0.126 4.126 17 C -0.181 4.181 18 C -0.173 4.173 19 C -0.174 4.174 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.842 -14.980 2.625 17.111 hybrid contribution 0.511 1.657 0.567 1.824 sum 8.353 -13.323 3.193 16.046 Atomic orbital electron populations 1.70116 1.07342 1.27268 1.51057 1.25779 0.95660 1.02513 0.94612 0.85532 0.79090 0.79530 0.77674 1.19024 1.20492 1.20562 1.21468 0.92935 0.91767 1.51084 0.92776 1.19518 0.92958 0.92217 0.93244 0.98031 1.22120 0.99448 0.93261 0.98599 1.22836 0.98068 0.94484 0.93093 1.64900 1.20993 1.10463 1.29075 1.22313 0.94753 0.94431 0.96176 1.21508 0.97338 0.97061 0.97850 1.22543 0.95150 0.96721 0.98174 1.23033 0.96718 0.98427 0.99949 1.22827 0.98396 0.98308 0.97758 1.22929 0.96913 1.00748 0.96790 1.23139 0.94761 0.90786 0.98104 0.92994 0.94779 0.94380 0.93938 0.90494 0.95609 0.90064 0.91739 0.93090 0.88507 0.91235 0.91445 0.89200 0.91215 0.90705 0.90676 0.91517 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 12.61 21.45 0.27 -54.21 16 2 C 0.01 0.76 5.35 84.66 0.45 1.21 16 3 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.53 -30.18 8.40 25.60 0.22 -29.96 16 8 H 0.05 2.99 7.78 -2.91 -0.02 2.97 16 9 C 0.04 2.09 2.93 -10.33 -0.03 2.06 16 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 11 C -0.10 -4.69 5.65 31.47 0.18 -4.51 16 12 C 0.04 1.69 6.70 86.45 0.58 2.27 16 13 N -0.53 -20.30 5.36 -881.71 -4.72 -25.03 16 14 C 0.05 1.54 4.84 86.30 0.42 1.96 16 15 C -0.10 -2.64 4.72 30.60 0.14 -2.50 16 16 C -0.11 -2.20 3.64 -10.27 -0.04 -2.24 16 17 C -0.14 -2.85 7.65 31.18 0.24 -2.61 16 18 C -0.14 -2.21 8.09 31.18 0.25 -1.96 16 19 C -0.14 -2.46 7.65 31.12 0.24 -2.22 16 20 C 0.06 2.58 4.80 86.56 0.42 3.00 16 21 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 22 H 0.03 1.75 7.84 -2.39 -0.02 1.73 16 23 H 0.04 1.98 8.11 -2.39 -0.02 1.96 16 24 H 0.04 1.53 7.67 -2.38 -0.02 1.51 16 25 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.03 0.79 7.97 -2.39 -0.02 0.77 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.05 1.48 6.91 -2.39 -0.02 1.46 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.44 8.10 -2.38 -0.02 1.42 16 37 H 0.07 2.80 7.78 -2.39 -0.02 2.78 16 38 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 Total: -1.00 -60.66 298.81 1.62 -59.04 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.99 Total: 9.56 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 3.06 Total: -35.50 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -4.45 Total: -79.24 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.66 1.62 -59.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398804035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.224 kcal (2) G-P(sol) polarization free energy of solvation -60.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds