Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00000 * 3 2 1 6 6 H 1.48494 * 109.47204 * 59.99947 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.50649 * 111.00464 * 278.09464 * 13 12 11 15 15 C 1.57337 * 100.34425 * 298.23936 * 14 13 12 16 16 C 1.54842 * 103.38655 * 326.41259 * 15 14 13 17 17 C 1.50649 * 111.00189 * 169.99885 * 13 12 11 18 18 C 1.55840 * 101.02974 * 170.24176 * 17 13 12 19 19 C 1.54840 * 103.51982 * 327.00554 * 18 17 13 20 20 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 22 22 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 23 23 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 24 24 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 25 25 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 26 26 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 28 28 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 29 29 H 1.09002 * 115.87804 * 63.33800 * 14 13 12 30 30 H 1.09000 * 110.33274 * 208.11464 * 15 14 13 31 31 H 1.08997 * 111.15629 * 85.10534 * 15 14 13 32 32 H 1.08997 * 110.60974 * 241.89497 * 16 15 14 33 33 H 1.09002 * 110.74149 * 118.97835 * 16 15 14 34 34 H 1.09009 * 115.88101 * 295.93775 * 17 13 12 35 35 H 1.08995 * 110.61646 * 85.51511 * 18 17 13 36 36 H 1.09005 * 110.61464 * 208.50340 * 18 17 13 37 37 H 1.08994 * 110.61537 * 241.49324 * 19 18 17 38 38 H 1.09000 * 110.74204 * 118.57246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 1.2994 -7.7911 1.3906 15 6 2.6958 -7.9248 2.1031 16 6 3.6181 -8.4695 0.9849 17 6 2.6698 -8.5822 -0.2467 18 6 1.7285 -9.7871 0.0542 19 6 0.7966 -9.2493 1.1677 20 1 -0.4850 0.8399 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 0.8541 -5.0446 -0.8914 26 1 0.8535 -5.0450 0.8885 27 1 3.1015 -6.0926 0.8881 28 1 3.1014 -6.0917 -0.8918 29 1 0.5948 -7.1069 1.8635 30 1 2.6336 -8.6340 2.9285 31 1 3.0515 -6.9569 2.4563 32 1 4.0129 -9.4486 1.2561 33 1 4.4308 -7.7723 0.7810 34 1 3.1617 -8.6007 -1.2193 35 1 1.1528 -10.0550 -0.8317 36 1 2.3019 -10.6417 0.4134 37 1 0.9081 -9.8372 2.0787 38 1 -0.2418 -9.2506 0.8362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398880185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = -3.617412 kcal Electronic energy + Delta-G solvation = -15382.623185 eV Core-core repulsion = 13031.353167 eV Total energy + Delta-G solvation = -2351.270018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69876 -35.03866 -32.84654 -31.14253 -30.20978 -29.38696 -27.64736 -24.44411 -22.24791 -21.87025 -20.10298 -19.75226 -19.22395 -16.29698 -16.17914 -15.76407 -15.20833 -14.43984 -14.32223 -13.42493 -12.92386 -12.51636 -12.24603 -12.16974 -11.98969 -11.82463 -11.50566 -11.38660 -11.22890 -11.04112 -10.91642 -10.72845 -10.41518 -10.38158 -10.26653 -10.07298 -9.55953 -9.20839 -8.94670 -8.43917 -8.29559 -5.94507 -3.96547 3.33829 3.40990 3.45397 3.87603 4.48104 4.50455 4.60672 4.79551 5.01269 5.14273 5.20903 5.28202 5.32112 5.33264 5.41013 5.59218 5.61085 5.69728 5.79970 5.82865 5.92325 6.04031 6.09721 6.15110 6.21685 6.24447 6.35699 6.56428 6.77122 6.93950 7.04459 7.14163 7.31521 7.75599 7.92006 8.07218 8.50157 9.11331 9.67170 11.16934 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062744 B = 0.004563 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.149823 B = 6134.186293 C = 6269.643121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.108 4.108 12 C 0.034 3.966 13 N -0.494 5.494 14 C 0.045 3.955 15 C -0.154 4.154 16 C -0.151 4.151 17 C 0.042 3.958 18 C -0.113 4.113 19 C -0.113 4.113 20 H 0.259 0.741 21 H 0.015 0.985 22 H 0.014 0.986 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -19.324 2.377 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.095 4.095 13 N -0.217 5.217 14 C -0.064 4.064 15 C -0.193 4.193 16 C -0.190 4.190 17 C -0.067 4.067 18 C -0.151 4.151 19 C -0.151 4.151 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.015 -19.110 1.924 19.622 hybrid contribution 1.193 1.008 0.639 1.687 sum 5.208 -18.102 2.563 19.010 Atomic orbital electron populations 1.69977 1.06046 1.26367 1.51199 1.25034 0.94828 0.99203 0.95470 0.86565 0.80124 0.83943 0.77546 1.19783 1.21029 1.21052 1.21338 0.93035 0.91236 1.50092 0.92757 1.19094 0.94046 0.91354 0.97133 1.21595 0.99059 0.94148 0.99894 1.21553 0.97767 0.93442 1.01820 1.22482 0.96511 0.89594 1.00863 1.67644 1.30536 1.01282 1.22212 1.24728 0.95843 0.96314 0.89468 1.23506 0.96349 1.01236 0.98173 1.23238 0.98506 1.01177 0.96063 1.24439 0.92563 0.92145 0.97552 1.22560 0.97325 0.96319 0.98891 1.22547 0.99621 0.94761 0.98193 0.93129 0.96623 0.96765 0.93817 0.93603 0.91974 0.92895 0.93720 0.91531 0.86888 0.91477 0.91087 0.91490 0.91578 0.87362 0.91275 0.91745 0.91708 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16 11 C -0.11 -1.96 5.41 -26.74 -0.14 -2.11 16 12 C 0.03 0.51 4.32 -3.83 -0.02 0.49 16 13 N -0.49 -6.77 5.54 -204.66 -1.13 -7.90 16 14 C 0.05 0.55 4.77 -61.72 -0.29 0.25 16 15 C -0.15 -1.70 5.69 -23.40 -0.13 -1.83 16 16 C -0.15 -1.57 5.65 -24.24 -0.14 -1.71 16 17 C 0.04 0.46 4.89 -62.57 -0.31 0.16 16 18 C -0.11 -1.09 6.45 -24.24 -0.16 -1.25 16 19 C -0.11 -1.15 6.46 -24.24 -0.16 -1.30 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.97 7.66 -51.93 -0.40 0.57 16 27 H 0.04 0.66 5.02 -51.93 -0.26 0.40 16 28 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.11 1.43 7.78 -51.93 -0.40 1.03 16 30 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 31 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.07 0.72 7.63 -51.93 -0.40 0.32 16 34 H 0.11 1.14 8.14 -51.92 -0.42 0.71 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 293.79 15.07 4.43 4.43 Total: -1.00 -30.70 293.79 -9.82 -40.52 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.80 Total: -3.89 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.03 Total: -23.31 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.40 Total: -34.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.70 -9.82 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398880185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.898 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds