Wall clock time and date at job start Mon Mar 30 2020 02:50:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86805 * 119.99740 * 2 1
4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.47152 * 300.00000 * 3 2 1
6 6 H 1.48494 * 109.47204 * 59.99947 * 3 2 1
7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2
11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7
12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9
13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10
14 14 C 1.50649 * 111.00464 * 278.09464 * 13 12 11
15 15 C 1.57337 * 100.34425 * 298.23936 * 14 13 12
16 16 C 1.54842 * 103.38655 * 326.41259 * 15 14 13
17 17 C 1.50649 * 111.00189 * 169.99885 * 13 12 11
18 18 C 1.55840 * 101.02974 * 170.24176 * 17 13 12
19 19 C 1.54840 * 103.51982 * 327.00554 * 18 17 13
20 20 H 0.96993 * 120.00442 * 0.02562 * 1 2 3
21 21 H 1.09002 * 109.47060 * 60.00183 * 9 7 2
22 22 H 1.09001 * 109.46927 * 300.00378 * 9 7 2
23 23 H 1.09002 * 109.47153 * 60.00002 * 10 9 7
24 24 H 1.09001 * 109.46832 * 300.00193 * 10 9 7
25 25 H 1.09002 * 109.47103 * 59.99753 * 11 10 9
26 26 H 1.08998 * 109.46862 * 300.00565 * 11 10 9
27 27 H 1.09002 * 109.47153 * 59.99783 * 12 11 10
28 28 H 1.09001 * 109.46832 * 299.99974 * 12 11 10
29 29 H 1.09002 * 115.87804 * 63.33800 * 14 13 12
30 30 H 1.09000 * 110.33274 * 208.11464 * 15 14 13
31 31 H 1.08997 * 111.15629 * 85.10534 * 15 14 13
32 32 H 1.08997 * 110.60974 * 241.89497 * 16 15 14
33 33 H 1.09002 * 110.74149 * 118.97835 * 16 15 14
34 34 H 1.09009 * 115.88101 * 295.93775 * 17 13 12
35 35 H 1.08995 * 110.61646 * 85.51511 * 18 17 13
36 36 H 1.09005 * 110.61464 * 208.50340 * 18 17 13
37 37 H 1.08994 * 110.61537 * 241.49324 * 19 18 17
38 38 H 1.09000 * 110.74204 * 118.57246 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 -1.2125
6 1 1.8903 2.3965 1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4805 -4.9871 -0.0012
12 6 2.4748 -6.1499 -0.0018
13 7 1.7403 -7.4222 -0.0018
14 6 1.2994 -7.7911 1.3906
15 6 2.6958 -7.9248 2.1031
16 6 3.6181 -8.4695 0.9849
17 6 2.6698 -8.5822 -0.2467
18 6 1.7285 -9.7871 0.0542
19 6 0.7966 -9.2493 1.1677
20 1 -0.4850 0.8399 -0.0004
21 1 0.6241 -2.5567 -0.8903
22 1 0.6248 -2.5571 0.8897
23 1 2.8720 -3.6043 0.8895
24 1 2.8720 -3.6042 -0.8905
25 1 0.8541 -5.0446 -0.8914
26 1 0.8535 -5.0450 0.8885
27 1 3.1015 -6.0926 0.8881
28 1 3.1014 -6.0917 -0.8918
29 1 0.5948 -7.1069 1.8635
30 1 2.6336 -8.6340 2.9285
31 1 3.0515 -6.9569 2.4563
32 1 4.0129 -9.4486 1.2561
33 1 4.4308 -7.7723 0.7810
34 1 3.1617 -8.6007 -1.2193
35 1 1.1528 -10.0550 -0.8317
36 1 2.3019 -10.6417 0.4134
37 1 0.9081 -9.8372 2.0787
38 1 -0.2418 -9.2506 0.8362
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000398880185.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:31
Heat of formation + Delta-G solvation = -3.617412 kcal
Electronic energy + Delta-G solvation = -15382.623185 eV
Core-core repulsion = 13031.353167 eV
Total energy + Delta-G solvation = -2351.270018 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.69876 -35.03866 -32.84654 -31.14253 -30.20978 -29.38696 -27.64736 -24.44411
-22.24791 -21.87025 -20.10298 -19.75226 -19.22395 -16.29698 -16.17914 -15.76407
-15.20833 -14.43984 -14.32223 -13.42493 -12.92386 -12.51636 -12.24603 -12.16974
-11.98969 -11.82463 -11.50566 -11.38660 -11.22890 -11.04112 -10.91642 -10.72845
-10.41518 -10.38158 -10.26653 -10.07298 -9.55953 -9.20839 -8.94670 -8.43917
-8.29559 -5.94507 -3.96547 3.33829 3.40990 3.45397 3.87603 4.48104
4.50455 4.60672 4.79551 5.01269 5.14273 5.20903 5.28202 5.32112
5.33264 5.41013 5.59218 5.61085 5.69728 5.79970 5.82865 5.92325
6.04031 6.09721 6.15110 6.21685 6.24447 6.35699 6.56428 6.77122
6.93950 7.04459 7.14163 7.31521 7.75599 7.92006 8.07218 8.50157
9.11331 9.67170 11.16934
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.062744 B = 0.004563 C = 0.004465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 446.149823 B = 6134.186293 C = 6269.643121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.890 3.110
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.109 4.109
11 C -0.108 4.108
12 C 0.034 3.966
13 N -0.494 5.494
14 C 0.045 3.955
15 C -0.154 4.154
16 C -0.151 4.151
17 C 0.042 3.958
18 C -0.113 4.113
19 C -0.113 4.113
20 H 0.259 0.741
21 H 0.015 0.985
22 H 0.014 0.986
23 H 0.043 0.957
24 H 0.045 0.955
25 H 0.061 0.939
26 H 0.052 0.948
27 H 0.045 0.955
28 H 0.066 0.934
29 H 0.113 0.887
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.066 0.934
33 H 0.065 0.935
34 H 0.108 0.892
35 H 0.068 0.932
36 H 0.064 0.936
37 H 0.064 0.936
38 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.634 -19.324 2.377 20.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.718 3.282
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.557 4.557
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.147 4.147
11 C -0.146 4.146
12 C -0.095 4.095
13 N -0.217 5.217
14 C -0.064 4.064
15 C -0.193 4.193
16 C -0.190 4.190
17 C -0.067 4.067
18 C -0.151 4.151
19 C -0.151 4.151
20 H 0.069 0.931
21 H 0.034 0.966
22 H 0.032 0.968
23 H 0.062 0.938
24 H 0.064 0.936
25 H 0.080 0.920
26 H 0.071 0.929
27 H 0.063 0.937
28 H 0.085 0.915
29 H 0.131 0.869
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.126 0.874
35 H 0.087 0.913
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 4.015 -19.110 1.924 19.622
hybrid contribution 1.193 1.008 0.639 1.687
sum 5.208 -18.102 2.563 19.010
Atomic orbital electron populations
1.69977 1.06046 1.26367 1.51199 1.25034 0.94828 0.99203 0.95470
0.86565 0.80124 0.83943 0.77546 1.19783 1.21029 1.21052 1.21338
0.93035 0.91236 1.50092 0.92757 1.19094 0.94046 0.91354 0.97133
1.21595 0.99059 0.94148 0.99894 1.21553 0.97767 0.93442 1.01820
1.22482 0.96511 0.89594 1.00863 1.67644 1.30536 1.01282 1.22212
1.24728 0.95843 0.96314 0.89468 1.23506 0.96349 1.01236 0.98173
1.23238 0.98506 1.01177 0.96063 1.24439 0.92563 0.92145 0.97552
1.22560 0.97325 0.96319 0.98891 1.22547 0.99621 0.94761 0.98193
0.93129 0.96623 0.96765 0.93817 0.93603 0.91974 0.92895 0.93720
0.91531 0.86888 0.91477 0.91087 0.91490 0.91578 0.87362 0.91275
0.91745 0.91708 0.91160
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16
4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16
11 C -0.11 -1.96 5.41 -26.74 -0.14 -2.11 16
12 C 0.03 0.51 4.32 -3.83 -0.02 0.49 16
13 N -0.49 -6.77 5.54 -204.66 -1.13 -7.90 16
14 C 0.05 0.55 4.77 -61.72 -0.29 0.25 16
15 C -0.15 -1.70 5.69 -23.40 -0.13 -1.83 16
16 C -0.15 -1.57 5.65 -24.24 -0.14 -1.71 16
17 C 0.04 0.46 4.89 -62.57 -0.31 0.16 16
18 C -0.11 -1.09 6.45 -24.24 -0.16 -1.25 16
19 C -0.11 -1.15 6.46 -24.24 -0.16 -1.30 16
20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16
24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
26 H 0.05 0.97 7.66 -51.93 -0.40 0.57 16
27 H 0.04 0.66 5.02 -51.93 -0.26 0.40 16
28 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16
29 H 0.11 1.43 7.78 -51.93 -0.40 1.03 16
30 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16
31 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16
32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16
33 H 0.07 0.72 7.63 -51.93 -0.40 0.32 16
34 H 0.11 1.14 8.14 -51.92 -0.42 0.71 16
35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
36 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16
37 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16
38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 293.79 15.07 4.43 4.43
Total: -1.00 -30.70 293.79 -9.82 -40.52
By element:
Atomic # 1 Polarization: 2.90 SS G_CDS: -6.80 Total: -3.89 kcal
Atomic # 6 Polarization: -21.28 SS G_CDS: -2.03 Total: -23.31 kcal
Atomic # 7 Polarization: -34.42 SS G_CDS: -0.40 Total: -34.82 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -30.70 -9.82 -40.52 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000398880185.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.898 kcal
(2) G-P(sol) polarization free energy of solvation -30.696 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds