Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47152 * 300.00000 * 3 2 1 6 6 H 1.48494 * 109.47204 * 59.99947 * 3 2 1 7 7 C 1.37880 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.50649 * 111.00464 * 278.09464 * 13 12 11 15 15 C 1.57337 * 100.34425 * 298.23936 * 14 13 12 16 16 C 1.54842 * 103.38655 * 326.41259 * 15 14 13 17 17 C 1.50649 * 111.00189 * 169.99885 * 13 12 11 18 18 C 1.55840 * 101.02974 * 170.24176 * 17 13 12 19 19 C 1.54840 * 103.51982 * 327.00554 * 18 17 13 20 20 H 0.96993 * 120.00442 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 22 22 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 23 23 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 24 24 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 25 25 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 26 26 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 27 27 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 28 28 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 29 29 H 1.09002 * 115.87804 * 63.33800 * 14 13 12 30 30 H 1.09000 * 110.33274 * 208.11464 * 15 14 13 31 31 H 1.08997 * 111.15629 * 85.10534 * 15 14 13 32 32 H 1.08997 * 110.60974 * 241.89497 * 16 15 14 33 33 H 1.09002 * 110.74149 * 118.97835 * 16 15 14 34 34 H 1.09009 * 115.88101 * 295.93775 * 17 13 12 35 35 H 1.08995 * 110.61646 * 85.51511 * 18 17 13 36 36 H 1.09005 * 110.61464 * 208.50340 * 18 17 13 37 37 H 1.08994 * 110.61537 * 241.49324 * 19 18 17 38 38 H 1.09000 * 110.74204 * 118.57246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 1.2994 -7.7911 1.3906 15 6 2.6958 -7.9248 2.1031 16 6 3.6181 -8.4695 0.9849 17 6 2.6698 -8.5822 -0.2467 18 6 1.7285 -9.7871 0.0542 19 6 0.7966 -9.2493 1.1677 20 1 -0.4850 0.8399 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 0.8541 -5.0446 -0.8914 26 1 0.8535 -5.0450 0.8885 27 1 3.1015 -6.0926 0.8881 28 1 3.1014 -6.0917 -0.8918 29 1 0.5948 -7.1069 1.8635 30 1 2.6336 -8.6340 2.9285 31 1 3.0515 -6.9569 2.4563 32 1 4.0129 -9.4486 1.2561 33 1 4.4308 -7.7723 0.7810 34 1 3.1617 -8.6007 -1.2193 35 1 1.1528 -10.0550 -0.8317 36 1 2.3019 -10.6417 0.4134 37 1 0.9081 -9.8372 2.0787 38 1 -0.2418 -9.2506 0.8362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398880185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = -21.864865 kcal Electronic energy + Delta-G solvation = -15383.414454 eV Core-core repulsion = 13031.353167 eV Total energy + Delta-G solvation = -2352.061287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61926 -36.76280 -34.76292 -32.59748 -31.17669 -30.25496 -29.31745 -26.23760 -23.46229 -23.03288 -21.84700 -20.74408 -20.21323 -18.43078 -17.25595 -16.79745 -16.52919 -16.22625 -15.65963 -14.77175 -14.38323 -13.98368 -13.63836 -13.57002 -13.21121 -12.93486 -12.80748 -12.77663 -12.57931 -12.26835 -12.26102 -12.08707 -11.95659 -11.77991 -11.53791 -11.33440 -11.28306 -10.95486 -10.89582 -10.57163 -9.47015 -8.20722 -6.32675 1.38902 1.39705 1.53279 2.40295 2.92412 3.11885 3.63831 3.71690 3.86070 4.09711 4.19126 4.24515 4.37875 4.38370 4.50313 4.51376 4.56328 4.60055 4.66897 4.79227 4.89155 4.95763 5.02788 5.08303 5.11949 5.19438 5.26579 5.29661 5.36757 5.37694 5.39811 5.53993 5.74492 5.82871 5.85832 6.13866 6.24649 6.84824 7.36860 8.91590 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062744 B = 0.004563 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.149823 B = 6134.186293 C = 6269.643121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.097 4.097 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.033 3.967 15 C -0.151 4.151 16 C -0.146 4.146 17 C 0.038 3.962 18 C -0.108 4.108 19 C -0.109 4.109 20 H 0.264 0.736 21 H -0.012 1.012 22 H -0.012 1.012 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -20.315 2.655 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.082 4.082 13 N -0.238 5.238 14 C -0.075 4.075 15 C -0.189 4.189 16 C -0.185 4.185 17 C -0.070 4.070 18 C -0.146 4.146 19 C -0.147 4.147 20 H 0.073 0.927 21 H 0.006 0.994 22 H 0.006 0.994 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.618 -20.122 2.203 21.008 hybrid contribution 0.630 1.297 0.553 1.545 sum 6.248 -18.825 2.756 20.025 Atomic orbital electron populations 1.70114 1.07921 1.27748 1.51781 1.26037 0.95793 1.03533 0.94650 0.85358 0.79047 0.78520 0.77874 1.18504 1.20248 1.20218 1.21763 0.93558 0.92460 1.50458 0.92171 1.19019 0.94494 0.93391 0.94491 1.21395 0.97942 0.93694 1.00308 1.21374 0.97952 0.93374 1.00813 1.22233 0.95427 0.89378 1.01195 1.67597 1.31372 1.01367 1.23481 1.24807 0.96465 0.97358 0.88864 1.23475 0.95564 1.01038 0.98871 1.23214 0.97918 1.02085 0.95252 1.24576 0.92676 0.91471 0.98261 1.22569 0.97026 0.96277 0.98696 1.22546 0.99385 0.93472 0.99293 0.92744 0.99383 0.99368 0.93223 0.93129 0.93300 0.93593 0.93233 0.91295 0.88374 0.89761 0.92549 0.89425 0.92164 0.86792 0.91368 0.89530 0.89830 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -32.29 9.11 25.60 0.23 -32.06 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.15 5.15 30.59 0.16 -3.99 16 11 C -0.10 -3.61 5.41 30.59 0.17 -3.44 16 12 C 0.05 1.37 4.32 86.30 0.37 1.74 16 13 N -0.52 -13.67 5.54 -801.41 -4.44 -18.11 16 14 C 0.03 0.78 4.77 46.69 0.22 1.00 16 15 C -0.15 -3.05 5.69 32.75 0.19 -2.86 16 16 C -0.15 -2.66 5.65 32.21 0.18 -2.48 16 17 C 0.04 0.77 4.89 46.14 0.23 0.99 16 18 C -0.11 -1.80 6.45 32.20 0.21 -1.59 16 19 C -0.11 -1.99 6.46 32.21 0.21 -1.78 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.74 7.66 -2.39 -0.02 1.72 16 27 H 0.05 1.42 5.02 -2.39 -0.01 1.41 16 28 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 29 H 0.10 2.53 7.78 -2.39 -0.02 2.51 16 30 H 0.08 1.41 7.89 -2.39 -0.02 1.39 16 31 H 0.06 1.30 6.91 -2.39 -0.02 1.28 16 32 H 0.09 1.26 7.85 -2.39 -0.02 1.24 16 33 H 0.06 1.18 7.63 -2.39 -0.02 1.16 16 34 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.09 7.85 -2.38 -0.02 1.07 16 37 H 0.08 1.21 7.89 -2.39 -0.02 1.19 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.17 293.79 1.64 -64.53 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.99 Total: 7.46 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 2.77 Total: -42.72 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -4.15 Total: -76.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -66.17 1.64 -64.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398880185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.663 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds