Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99835 * 2 1 4 4 H 1.48500 * 109.47290 * 270.00010 * 3 2 1 5 5 H 1.48501 * 109.47213 * 30.00285 * 3 2 1 6 6 H 1.48500 * 109.46961 * 149.99878 * 3 2 1 7 7 C 1.37878 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00371 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52440 * 174.99877 * 10 9 7 12 12 C 1.53034 * 109.27897 * 177.56259 * 11 10 9 13 13 N 1.46854 * 109.52043 * 300.82324 * 12 11 10 14 14 C 1.46903 * 110.99633 * 185.84169 * 13 12 11 15 15 C 1.53003 * 109.47061 * 170.00055 * 14 13 12 16 16 C 1.53001 * 117.51964 * 116.28123 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 14 18 18 C 1.46837 * 111.20184 * 61.74214 * 13 12 11 19 19 C 1.53039 * 109.52401 * 298.25819 * 18 13 12 20 20 H 0.96996 * 120.00437 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47235 * 59.99505 * 9 7 2 22 22 H 1.09002 * 109.47558 * 299.99773 * 9 7 2 23 23 H 1.09004 * 109.57173 * 54.84401 * 10 9 7 24 24 H 1.08999 * 109.49984 * 57.62036 * 11 10 9 25 25 H 1.08994 * 109.50265 * 297.50546 * 11 10 9 26 26 H 1.08997 * 109.46603 * 180.81037 * 12 11 10 27 27 H 1.09001 * 109.46437 * 60.83693 * 12 11 10 28 28 H 1.08999 * 109.47623 * 49.99557 * 14 13 12 29 29 H 1.09005 * 109.46959 * 289.99571 * 14 13 12 30 30 H 1.09002 * 115.54973 * 330.57907 * 15 14 13 31 31 H 1.09001 * 117.49733 * 214.97413 * 16 15 14 32 32 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 33 33 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 34 34 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 35 35 H 1.09003 * 109.46507 * 58.27339 * 18 13 12 36 36 H 1.08998 * 109.46501 * 178.23763 * 18 13 12 37 37 H 1.09000 * 109.50097 * 299.23652 * 19 18 13 38 38 H 1.09001 * 109.50281 * 179.12010 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5475 -2.6398 -0.1274 12 6 6.0565 -4.0816 -0.0655 13 7 5.6515 -4.6908 1.2078 14 6 6.2398 -6.0280 1.3623 15 6 6.0061 -6.5262 2.7899 16 6 5.1339 -7.7702 2.9707 17 6 6.6460 -7.8581 3.1870 18 6 4.1892 -4.7418 1.3308 19 6 3.6244 -3.3196 1.3106 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.5853 -3.1781 -0.8404 24 1 5.9815 -2.0651 0.6908 25 1 5.8347 -2.1930 -1.0791 26 1 7.1439 -4.0865 -0.1408 27 1 5.6328 -4.6522 -0.8920 28 1 7.3107 -5.9789 1.1653 29 1 5.7717 -6.7146 0.6567 30 1 5.9419 -5.7512 3.5537 31 1 4.4959 -7.8135 3.8534 32 1 4.7261 -8.2337 2.0725 33 1 7.2332 -8.3796 2.4310 34 1 7.0027 -7.9592 4.2120 35 1 3.7742 -5.3092 0.4978 36 1 3.9203 -5.2261 2.2695 37 1 4.0282 -2.7557 2.1514 38 1 2.5377 -3.3586 1.3862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399426942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = 6.240721 kcal Electronic energy + Delta-G solvation = -15515.671312 eV Core-core repulsion = 13164.828775 eV Total energy + Delta-G solvation = -2350.842537 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.04806 -37.11308 -34.19044 -32.13891 -30.37768 -28.90744 -26.00489 -23.14434 -22.83976 -22.32322 -20.53298 -20.19648 -18.94592 -16.69220 -16.23928 -15.01034 -14.62501 -14.52346 -14.24951 -13.68031 -13.40572 -12.86137 -12.72626 -12.50426 -12.02160 -11.79033 -11.63725 -11.40612 -11.26131 -10.88240 -10.67323 -10.55324 -10.37189 -10.13360 -9.96537 -9.66810 -9.53438 -9.20934 -8.95773 -8.47936 -8.08329 -5.98998 -3.95665 3.34424 3.41887 3.46670 3.68317 4.06825 4.50402 4.70874 4.83644 4.95655 5.28584 5.33230 5.35172 5.38199 5.50049 5.51185 5.57277 5.74264 5.75775 5.79444 5.90422 5.99011 5.99775 6.11551 6.20564 6.23841 6.40470 6.54084 6.62342 6.90604 7.00577 7.09487 7.31277 7.35619 7.43271 7.56579 7.86788 8.60602 9.06372 9.64495 11.14527 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049671 B = 0.005621 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.573887 B = 4980.446007 C = 5295.863951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.536 5.536 14 C 0.086 3.914 15 C -0.142 4.142 16 C -0.184 4.184 17 C -0.181 4.181 18 C 0.057 3.943 19 C -0.101 4.101 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.009 0.991 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 -12.407 3.557 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.260 5.260 14 C -0.042 4.042 15 C -0.160 4.160 16 C -0.221 4.221 17 C -0.219 4.219 18 C -0.070 4.070 19 C -0.139 4.139 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.178 -11.988 3.927 18.242 hybrid contribution -0.007 0.375 -0.686 0.782 sum 13.171 -11.612 3.241 17.856 Atomic orbital electron populations 1.69915 1.06289 1.26738 1.51655 1.25029 0.94686 0.99101 0.94763 0.86802 0.80440 0.83785 0.78399 1.20449 1.21527 1.18985 1.21165 0.89559 0.94275 1.50118 0.90989 1.19610 0.97045 0.91855 0.96104 1.21053 0.92464 0.98762 0.96917 1.21721 0.97588 0.94538 1.01366 1.22073 0.99259 0.96232 0.89267 1.61930 1.10318 1.19625 1.34171 1.21629 0.99331 0.89598 0.93665 1.22310 1.04022 0.91067 0.98608 1.23049 0.93351 1.02457 1.03252 1.22934 0.95748 1.00930 1.02263 1.22193 0.86118 0.98654 1.00069 1.21557 1.01012 0.93044 0.98259 0.92878 0.96563 0.97257 0.92520 0.91620 0.92172 0.91659 0.95394 0.90888 0.95179 0.86939 0.88902 0.89085 0.89100 0.88913 0.95582 0.91188 0.91991 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.60 9.00 -34.44 -0.31 -14.91 16 8 H 0.07 2.19 7.33 -52.49 -0.38 1.81 16 9 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 10 C -0.07 -1.47 2.20 -90.50 -0.20 -1.67 16 11 C -0.11 -1.91 5.38 -26.65 -0.14 -2.06 16 12 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 13 N -0.54 -7.81 4.66 -234.67 -1.09 -8.90 16 14 C 0.09 1.03 5.24 -3.82 -0.02 1.01 16 15 C -0.14 -1.56 4.70 -90.61 -0.43 -1.99 16 16 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16 17 C -0.18 -1.65 10.25 -26.73 -0.27 -1.92 16 18 C 0.06 0.90 5.31 -3.84 -0.02 0.88 16 19 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 22 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.83 8.01 -51.93 -0.42 0.41 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.81 7.99 -51.93 -0.41 0.39 16 29 H 0.03 0.36 7.86 -51.93 -0.41 -0.04 16 30 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.04 7.10 -51.93 -0.37 0.67 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.61 7.05 -51.93 -0.37 1.24 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -29.88 296.57 -9.47 -39.36 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.94 Total: -2.43 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.02 Total: -22.47 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.32 Total: -36.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.88 -9.47 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399426942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.600 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds