Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99835 * 2 1 4 4 H 1.48500 * 109.47290 * 270.00010 * 3 2 1 5 5 H 1.48501 * 109.47213 * 30.00285 * 3 2 1 6 6 H 1.48500 * 109.46961 * 149.99878 * 3 2 1 7 7 C 1.37878 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00371 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52440 * 174.99877 * 10 9 7 12 12 C 1.53034 * 109.27897 * 177.56259 * 11 10 9 13 13 N 1.46854 * 109.52043 * 300.82324 * 12 11 10 14 14 C 1.46903 * 110.99633 * 185.84169 * 13 12 11 15 15 C 1.53003 * 109.47061 * 170.00055 * 14 13 12 16 16 C 1.53001 * 117.51964 * 116.28123 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 14 18 18 C 1.46837 * 111.20184 * 61.74214 * 13 12 11 19 19 C 1.53039 * 109.52401 * 298.25819 * 18 13 12 20 20 H 0.96996 * 120.00437 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47235 * 59.99505 * 9 7 2 22 22 H 1.09002 * 109.47558 * 299.99773 * 9 7 2 23 23 H 1.09004 * 109.57173 * 54.84401 * 10 9 7 24 24 H 1.08999 * 109.49984 * 57.62036 * 11 10 9 25 25 H 1.08994 * 109.50265 * 297.50546 * 11 10 9 26 26 H 1.08997 * 109.46603 * 180.81037 * 12 11 10 27 27 H 1.09001 * 109.46437 * 60.83693 * 12 11 10 28 28 H 1.08999 * 109.47623 * 49.99557 * 14 13 12 29 29 H 1.09005 * 109.46959 * 289.99571 * 14 13 12 30 30 H 1.09002 * 115.54973 * 330.57907 * 15 14 13 31 31 H 1.09001 * 117.49733 * 214.97413 * 16 15 14 32 32 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 33 33 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 34 34 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 35 35 H 1.09003 * 109.46507 * 58.27339 * 18 13 12 36 36 H 1.08998 * 109.46501 * 178.23763 * 18 13 12 37 37 H 1.09000 * 109.50097 * 299.23652 * 19 18 13 38 38 H 1.09001 * 109.50281 * 179.12010 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5475 -2.6398 -0.1274 12 6 6.0565 -4.0816 -0.0655 13 7 5.6515 -4.6908 1.2078 14 6 6.2398 -6.0280 1.3623 15 6 6.0061 -6.5262 2.7899 16 6 5.1339 -7.7702 2.9707 17 6 6.6460 -7.8581 3.1870 18 6 4.1892 -4.7418 1.3308 19 6 3.6244 -3.3196 1.3106 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.5853 -3.1781 -0.8404 24 1 5.9815 -2.0651 0.6908 25 1 5.8347 -2.1930 -1.0791 26 1 7.1439 -4.0865 -0.1408 27 1 5.6328 -4.6522 -0.8920 28 1 7.3107 -5.9789 1.1653 29 1 5.7717 -6.7146 0.6567 30 1 5.9419 -5.7512 3.5537 31 1 4.4959 -7.8135 3.8534 32 1 4.7261 -8.2337 2.0725 33 1 7.2332 -8.3796 2.4310 34 1 7.0027 -7.9592 4.2120 35 1 3.7742 -5.3092 0.4978 36 1 3.9203 -5.2261 2.2695 37 1 4.0282 -2.7557 2.1514 38 1 2.5377 -3.3586 1.3862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399426942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = -11.361880 kcal Electronic energy + Delta-G solvation = -15516.434618 eV Core-core repulsion = 13164.828775 eV Total energy + Delta-G solvation = -2351.605843 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25680 -38.12545 -35.78551 -34.12674 -31.71200 -30.59928 -27.40246 -24.77883 -24.09916 -23.13233 -22.11563 -21.14374 -20.46999 -18.85745 -17.29387 -16.35099 -16.08439 -15.72597 -15.54612 -15.22076 -14.73269 -14.56168 -14.22896 -13.84807 -13.56108 -13.28163 -12.94825 -12.62072 -12.39075 -12.32202 -12.21616 -12.05162 -11.85744 -11.65433 -11.26237 -11.24195 -10.92459 -10.80235 -10.74461 -10.67694 -9.23105 -8.26191 -6.28431 1.35796 1.37925 1.50119 2.38128 2.84224 3.05482 3.09540 3.84841 4.00265 4.02712 4.06953 4.09219 4.19100 4.36606 4.47689 4.53722 4.63518 4.69867 4.75752 4.81260 4.81828 4.89402 4.96958 5.04938 5.07647 5.11875 5.24114 5.28458 5.33867 5.37331 5.41446 5.52318 5.72265 5.74885 6.18344 6.27019 6.34608 6.78691 7.35394 8.90670 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049671 B = 0.005621 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.573887 B = 4980.446007 C = 5295.863951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.520 4.520 8 H 0.033 0.967 9 C -0.005 4.005 10 C -0.072 4.072 11 C -0.108 4.108 12 C 0.062 3.938 13 N -0.543 5.543 14 C 0.089 3.911 15 C -0.157 4.157 16 C -0.189 4.189 17 C -0.163 4.163 18 C 0.070 3.930 19 C -0.096 4.096 20 H 0.264 0.736 21 H 0.016 0.984 22 H 0.015 0.985 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.021 0.979 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.985 -12.691 3.654 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.558 4.558 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.091 4.091 11 C -0.145 4.145 12 C -0.065 4.065 13 N -0.268 5.268 14 C -0.039 4.039 15 C -0.175 4.175 16 C -0.226 4.226 17 C -0.201 4.201 18 C -0.058 4.058 19 C -0.134 4.134 20 H 0.073 0.927 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.039 0.961 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.026 -12.293 4.024 20.594 hybrid contribution -0.954 0.385 -0.705 1.247 sum 15.072 -11.908 3.319 19.493 Atomic orbital electron populations 1.70071 1.08261 1.27948 1.53288 1.25996 0.95560 1.03403 0.94452 0.85684 0.79499 0.78511 0.79110 1.19222 1.21130 1.17188 1.21472 0.92029 0.92882 1.49372 0.94903 1.19568 0.93940 0.94708 0.96066 1.20984 0.95253 0.96046 0.96798 1.21639 0.94319 0.96571 1.02014 1.22071 1.00803 0.94457 0.89214 1.61916 1.08981 1.21513 1.34341 1.21679 0.99928 0.88020 0.94253 1.22231 1.05936 0.91543 0.97808 1.23103 0.94258 1.01845 1.03418 1.23015 0.95034 0.98828 1.03191 1.21966 0.87361 0.96063 1.00399 1.21431 0.99107 0.95310 0.97591 0.92683 0.96580 0.96661 0.93941 0.91665 0.90964 0.88860 0.95345 0.89329 0.95040 0.88170 0.88713 0.89099 0.87933 0.87860 0.96052 0.90297 0.92533 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.00 0.11 5.47 84.66 0.46 0.58 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.52 -30.46 9.00 25.60 0.23 -30.23 16 8 H 0.03 2.12 7.33 -2.91 -0.02 2.10 16 9 C -0.01 -0.26 3.52 29.85 0.11 -0.16 16 10 C -0.07 -2.89 2.20 -10.71 -0.02 -2.91 16 11 C -0.11 -3.38 5.38 30.65 0.16 -3.21 16 12 C 0.06 1.63 5.46 86.32 0.47 2.10 16 13 N -0.54 -14.70 4.66 -896.36 -4.17 -18.87 16 14 C 0.09 1.90 5.24 86.30 0.45 2.35 16 15 C -0.16 -3.13 4.70 -10.79 -0.05 -3.18 16 16 C -0.19 -3.41 10.18 30.59 0.31 -3.10 16 17 C -0.16 -2.52 10.25 30.60 0.31 -2.20 16 18 C 0.07 2.18 5.31 86.33 0.46 2.64 16 19 C -0.10 -3.73 5.15 30.65 0.16 -3.57 16 20 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 21 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 22 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 23 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.64 7.99 -2.39 -0.02 1.62 16 29 H 0.03 0.68 7.86 -2.38 -0.02 0.66 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 2.30 7.10 -2.39 -0.02 2.28 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.04 1.96 7.05 -2.39 -0.02 1.94 16 Total: -1.00 -65.25 296.57 2.00 -63.26 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.93 Total: 10.04 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.05 Total: -40.92 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -3.87 Total: -79.62 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -65.25 2.00 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399426942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.896 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds