Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48501 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47134 * 299.99815 * 3 2 1 6 6 H 1.48501 * 109.47357 * 60.00205 * 3 2 1 7 7 C 1.37878 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99637 * 0.02562 * 7 2 1 10 10 N 1.46911 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99678 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46733 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46846 * 304.99842 * 12 11 10 14 14 C 1.52997 * 109.47084 * 65.00122 * 12 11 10 15 15 C 1.53002 * 109.46817 * 120.00021 * 14 12 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52998 * 109.46959 * 185.00459 * 12 11 10 19 19 C 1.53002 * 109.46888 * 299.99726 * 18 12 11 20 20 C 1.52996 * 109.47346 * 299.99737 * 15 14 12 21 21 H 0.97006 * 120.00125 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47427 * 60.00009 * 9 7 2 23 23 H 1.09004 * 109.47198 * 299.99632 * 9 7 2 24 24 H 1.00898 * 110.99549 * 303.95352 * 10 9 7 25 25 H 1.09006 * 109.46777 * 60.00506 * 11 10 9 26 26 H 1.08994 * 109.47099 * 299.99897 * 11 10 9 27 27 H 1.08993 * 109.47194 * 359.97438 * 14 12 11 28 28 H 1.09002 * 109.46695 * 239.99516 * 14 12 11 29 29 H 1.09004 * 109.46733 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 31 31 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47508 * 119.99984 * 17 16 15 33 33 H 1.08998 * 109.47420 * 240.00733 * 17 16 15 34 34 H 1.09000 * 109.47329 * 59.99907 * 18 12 11 35 35 H 1.08998 * 109.47006 * 60.00150 * 19 18 12 36 36 H 1.08999 * 109.47160 * 180.02562 * 19 18 12 37 37 H 1.08992 * 109.47554 * 180.02562 * 20 15 14 38 38 H 1.09004 * 109.47108 * 300.00289 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9071 0.0011 12 6 2.5302 -6.0430 0.0018 13 1 3.2113 -5.9183 -0.8401 14 6 3.3244 -6.0126 1.3091 15 6 3.1286 -7.3338 2.0556 16 6 3.6241 -8.4900 1.1846 17 6 2.8299 -8.5204 -0.1228 18 6 1.8050 -7.3843 -0.1234 19 6 0.8489 -7.5593 1.0582 20 6 1.6431 -7.5291 2.3657 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5486 -0.7808 25 1 0.8802 -4.9817 -0.8887 26 1 0.8808 -4.9812 0.8913 27 1 2.9717 -5.1887 1.9294 28 1 4.3827 -5.8736 1.0882 29 1 3.6947 -7.3123 2.9868 30 1 4.6824 -8.3509 0.9637 31 1 3.4841 -9.4312 1.7162 32 1 3.5110 -8.3956 -0.9646 33 1 2.3131 -9.4759 -0.2119 34 1 1.2392 -7.4059 -1.0548 35 1 0.1188 -6.7501 1.0578 36 1 0.3325 -8.5151 0.9693 37 1 1.5036 -8.4700 2.8978 38 1 1.2901 -6.7053 2.9862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400086417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -35.737936 kcal Electronic energy + Delta-G solvation = -15761.708350 eV Core-core repulsion = 13409.045482 eV Total energy + Delta-G solvation = -2352.662868 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37285 -35.31816 -32.69432 -31.29673 -30.78509 -30.50051 -26.73236 -24.03625 -22.47630 -21.97304 -21.23936 -20.64597 -16.57504 -16.31568 -16.17929 -15.63987 -15.01816 -14.59284 -14.25200 -13.13783 -13.02828 -12.47946 -12.09003 -11.99091 -11.94838 -11.83034 -11.81320 -11.66033 -11.57453 -11.11087 -10.79187 -10.64214 -10.57433 -10.29814 -9.96188 -9.62794 -9.55943 -9.48561 -9.08111 -8.45516 -7.20857 -6.00634 -4.02286 3.32524 3.39588 3.44974 4.45047 4.66030 4.72396 4.78547 5.23261 5.35374 5.38576 5.41336 5.47318 5.50858 5.51534 5.55773 5.62714 5.73101 5.75961 5.85865 6.03776 6.11586 6.18526 6.25536 6.31491 6.34572 6.42771 6.49760 6.50759 6.69791 6.76266 6.86510 7.31234 7.47367 7.82783 8.17269 8.45969 8.67893 9.07873 9.62680 11.10616 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053891 B = 0.005413 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.446584 B = 5171.189111 C = 5286.198327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.688 5.688 11 C 0.064 3.936 12 C -0.076 4.076 13 H 0.062 0.938 14 C -0.099 4.099 15 C -0.089 4.089 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.111 4.111 21 H 0.260 0.740 22 H -0.016 1.016 23 H 0.026 0.974 24 H 0.326 0.674 25 H 0.013 0.987 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -16.753 1.563 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.066 4.066 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.100 4.100 19 C -0.152 4.152 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.002 0.998 23 H 0.044 0.956 24 H 0.142 0.858 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.347 -16.612 2.256 17.319 hybrid contribution -0.037 0.926 -0.955 1.330 sum 4.311 -15.686 1.301 16.320 Atomic orbital electron populations 1.69977 1.06100 1.26610 1.51181 1.24998 0.94864 0.99372 0.95426 0.86438 0.80078 0.83395 0.77476 1.19657 1.21120 1.21013 1.21246 0.93542 0.90293 1.49956 0.91937 1.19542 0.90645 0.87520 0.95612 1.60638 1.21142 1.01352 1.48715 1.22028 0.95010 0.90102 0.99433 1.21120 0.96965 0.93316 0.98124 0.91947 1.21490 0.99421 0.96432 0.96301 1.21082 0.95920 0.95605 0.98098 1.21530 0.99244 0.98015 0.96135 1.21514 0.97769 0.97994 0.97579 1.21036 0.96090 0.94791 0.98111 1.21555 0.97743 1.01249 0.94627 1.21500 0.95097 1.01083 0.97196 0.93016 0.99809 0.95559 0.85789 0.96915 0.91661 0.90285 0.92675 0.91754 0.92342 0.92667 0.92326 0.92518 0.91671 0.91560 0.92692 0.92745 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.20 5.44 -4.97 -0.03 5.18 16 10 N -0.69 -15.04 6.06 -115.05 -0.70 -15.74 16 11 C 0.06 1.17 4.30 -3.82 -0.02 1.15 16 12 C -0.08 -1.12 2.36 -90.62 -0.21 -1.34 16 13 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.43 5.16 -26.73 -0.14 -1.56 16 15 C -0.09 -1.07 3.19 -90.62 -0.29 -1.36 16 16 C -0.11 -1.20 5.71 -26.73 -0.15 -1.35 16 17 C -0.11 -1.21 5.71 -26.73 -0.15 -1.36 16 18 C -0.08 -1.02 2.72 -90.62 -0.25 -1.27 16 19 C -0.11 -1.40 5.36 -26.73 -0.14 -1.54 16 20 C -0.11 -1.33 5.71 -26.73 -0.15 -1.48 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H -0.02 -0.45 8.14 -51.93 -0.42 -0.88 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.33 6.87 8.72 -39.29 -0.34 6.52 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 1.23 6.71 -51.93 -0.35 0.88 16 27 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -29.65 290.16 -9.44 -39.09 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.88 Total: 0.47 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.95 Total: -18.56 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.04 Total: -42.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.65 -9.44 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400086417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.348 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds