Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48501 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47134 * 299.99815 * 3 2 1 6 6 H 1.48501 * 109.47357 * 60.00205 * 3 2 1 7 7 C 1.37878 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99637 * 0.02562 * 7 2 1 10 10 N 1.46911 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99678 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46733 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46846 * 304.99842 * 12 11 10 14 14 C 1.52997 * 109.47084 * 65.00122 * 12 11 10 15 15 C 1.53002 * 109.46817 * 120.00021 * 14 12 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52998 * 109.46959 * 185.00459 * 12 11 10 19 19 C 1.53002 * 109.46888 * 299.99726 * 18 12 11 20 20 C 1.52996 * 109.47346 * 299.99737 * 15 14 12 21 21 H 0.97006 * 120.00125 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47427 * 60.00009 * 9 7 2 23 23 H 1.09004 * 109.47198 * 299.99632 * 9 7 2 24 24 H 1.00898 * 110.99549 * 303.95352 * 10 9 7 25 25 H 1.09006 * 109.46777 * 60.00506 * 11 10 9 26 26 H 1.08994 * 109.47099 * 299.99897 * 11 10 9 27 27 H 1.08993 * 109.47194 * 359.97438 * 14 12 11 28 28 H 1.09002 * 109.46695 * 239.99516 * 14 12 11 29 29 H 1.09004 * 109.46733 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 31 31 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47508 * 119.99984 * 17 16 15 33 33 H 1.08998 * 109.47420 * 240.00733 * 17 16 15 34 34 H 1.09000 * 109.47329 * 59.99907 * 18 12 11 35 35 H 1.08998 * 109.47006 * 60.00150 * 19 18 12 36 36 H 1.08999 * 109.47160 * 180.02562 * 19 18 12 37 37 H 1.08992 * 109.47554 * 180.02562 * 20 15 14 38 38 H 1.09004 * 109.47108 * 300.00289 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9071 0.0011 12 6 2.5302 -6.0430 0.0018 13 1 3.2113 -5.9183 -0.8401 14 6 3.3244 -6.0126 1.3091 15 6 3.1286 -7.3338 2.0556 16 6 3.6241 -8.4900 1.1846 17 6 2.8299 -8.5204 -0.1228 18 6 1.8050 -7.3843 -0.1234 19 6 0.8489 -7.5593 1.0582 20 6 1.6431 -7.5291 2.3657 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8405 -3.5486 -0.7808 25 1 0.8802 -4.9817 -0.8887 26 1 0.8808 -4.9812 0.8913 27 1 2.9717 -5.1887 1.9294 28 1 4.3827 -5.8736 1.0882 29 1 3.6947 -7.3123 2.9868 30 1 4.6824 -8.3509 0.9637 31 1 3.4841 -9.4312 1.7162 32 1 3.5110 -8.3956 -0.9646 33 1 2.3131 -9.4759 -0.2119 34 1 1.2392 -7.4059 -1.0548 35 1 0.1188 -6.7501 1.0578 36 1 0.3325 -8.5151 0.9693 37 1 1.5036 -8.4700 2.8978 38 1 1.2901 -6.7053 2.9862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400086417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -53.356774 kcal Electronic energy + Delta-G solvation = -15762.472360 eV Core-core repulsion = 13409.045482 eV Total energy + Delta-G solvation = -2353.426878 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42934 -37.09929 -34.73179 -32.49306 -31.91407 -31.66181 -28.67210 -25.67162 -23.61406 -23.36313 -22.72506 -21.91185 -18.60400 -17.48831 -17.30904 -16.75850 -16.56330 -16.16297 -15.97347 -14.85626 -14.57674 -13.92082 -13.65587 -13.45356 -13.03480 -12.88402 -12.87512 -12.84753 -12.80311 -12.76217 -12.45718 -12.37799 -12.09076 -11.92436 -11.40705 -11.22415 -10.70978 -10.62758 -10.59122 -10.53860 -9.10857 -8.24211 -6.35903 1.40176 1.41216 1.55378 2.39129 3.08977 3.48780 3.68362 3.77583 3.91309 4.23225 4.40663 4.42573 4.48084 4.51642 4.55038 4.55478 4.62120 4.72360 4.81234 4.84248 4.87866 5.06056 5.09105 5.18311 5.22591 5.27255 5.34804 5.43150 5.50140 5.54610 5.56970 5.62618 5.63708 5.68843 6.00845 6.44382 6.72178 6.88413 7.35486 8.87917 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053891 B = 0.005413 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.446584 B = 5171.189111 C = 5286.198327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.068 3.932 12 C -0.069 4.069 13 H 0.065 0.935 14 C -0.097 4.097 15 C -0.087 4.087 16 C -0.108 4.108 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.111 4.111 21 H 0.265 0.735 22 H -0.043 1.043 23 H -0.004 1.004 24 H 0.333 0.667 25 H 0.007 0.993 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -17.867 1.502 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.061 4.061 12 C -0.088 4.088 13 H 0.083 0.917 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.099 4.099 19 C -0.153 4.153 20 C -0.149 4.149 21 H 0.074 0.926 22 H -0.025 1.025 23 H 0.014 0.986 24 H 0.149 0.851 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.802 -17.751 2.193 18.804 hybrid contribution -0.535 1.251 -0.927 1.646 sum 5.267 -16.500 1.266 17.367 Atomic orbital electron populations 1.70106 1.07919 1.27995 1.51615 1.26000 0.95806 1.03547 0.94499 0.85236 0.78901 0.78042 0.77805 1.18582 1.20174 1.20321 1.21578 0.93816 0.91376 1.50522 0.91686 1.19192 0.90677 0.89220 0.92841 1.60525 1.20340 1.01570 1.48997 1.22078 0.95849 0.89667 0.98554 1.21065 0.96096 0.93121 0.98497 0.91682 1.21434 0.99227 0.97024 0.95805 1.21075 0.96157 0.94815 0.98473 1.21523 0.99416 0.97890 0.95746 1.21505 0.97337 0.97705 0.97933 1.21035 0.96557 0.94056 0.98260 1.21564 0.97448 1.01508 0.94751 1.21510 0.94949 1.01490 0.96949 0.92582 1.02541 0.98590 0.85052 0.97461 0.92800 0.93446 0.92374 0.91022 0.91782 0.90856 0.91841 0.90750 0.91621 0.93659 0.90688 0.90633 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.53 -31.46 9.32 25.60 0.24 -31.22 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.71 5.44 85.55 0.47 12.18 16 10 N -0.68 -30.88 6.06 -517.89 -3.14 -34.01 16 11 C 0.07 2.56 4.30 86.30 0.37 2.93 16 12 C -0.07 -2.00 2.36 -10.80 -0.03 -2.02 16 13 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.10 -2.76 5.16 30.59 0.16 -2.61 16 15 C -0.09 -1.95 3.19 -10.79 -0.03 -1.98 16 16 C -0.11 -1.97 5.71 30.59 0.17 -1.79 16 17 C -0.11 -2.00 5.71 30.60 0.17 -1.82 16 18 C -0.08 -1.89 2.72 -10.79 -0.03 -1.92 16 19 C -0.12 -2.69 5.36 30.60 0.16 -2.52 16 20 C -0.11 -2.52 5.71 30.59 0.17 -2.34 16 21 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 22 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.33 14.25 8.72 -89.70 -0.78 13.47 16 25 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 26 H 0.05 2.14 6.71 -2.39 -0.02 2.12 16 27 H 0.05 1.64 7.42 -2.39 -0.02 1.62 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.23 6.54 -2.39 -0.02 1.21 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -64.31 290.16 1.69 -62.62 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.22 Total: 14.63 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 2.29 Total: -32.69 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -2.85 Total: -91.66 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.31 1.69 -62.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400086417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.262 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds