Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47162 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.47391 * 54.99548 * 12 11 10 14 14 C 1.53000 * 109.47061 * 294.99734 * 12 11 10 15 15 C 1.53007 * 109.47133 * 239.99819 * 14 12 11 16 16 C 1.52995 * 109.47358 * 300.00371 * 15 14 12 17 17 C 1.52995 * 109.47503 * 59.99467 * 16 15 14 18 18 C 1.53001 * 109.47151 * 174.99548 * 12 11 10 19 19 C 1.52993 * 109.46811 * 60.00037 * 18 12 11 20 20 C 1.53003 * 109.47695 * 59.99870 * 19 18 12 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 25 25 H 1.09005 * 109.46340 * 299.99822 * 11 10 9 26 26 H 1.08991 * 109.47249 * 59.99593 * 11 10 9 27 27 H 1.08998 * 109.47266 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47383 * 120.00034 * 14 12 11 29 29 H 1.09001 * 109.46971 * 179.97438 * 15 14 12 30 30 H 1.09003 * 109.46746 * 299.99534 * 16 15 14 31 31 H 1.08996 * 109.47091 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47587 * 240.00271 * 17 16 15 33 33 H 1.08997 * 109.47340 * 120.00150 * 17 16 15 34 34 H 1.08992 * 109.47074 * 299.99987 * 18 12 11 35 35 H 1.09005 * 109.47210 * 179.97438 * 19 18 12 36 36 H 1.09000 * 109.47308 * 299.99933 * 19 18 12 37 37 H 1.08991 * 109.47708 * 239.99962 * 20 19 18 38 38 H 1.09000 * 109.47034 * 119.99232 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 4.0011 -2.5791 0.0106 11 6 5.4697 -2.6183 0.0174 12 6 5.9409 -4.0738 0.0229 13 1 5.4959 -4.6031 -0.8198 14 6 5.5121 -4.7438 1.3298 15 6 6.7511 -5.2333 2.0825 16 6 7.5083 -6.2422 1.2167 17 6 7.9371 -5.5723 -0.0903 18 6 7.4657 -4.1167 -0.0958 19 6 8.0903 -3.3739 1.0869 20 6 7.6616 -4.0438 2.3939 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.6224 -3.0938 0.7915 25 1 5.8506 -2.1160 -0.8719 26 1 5.8425 -2.1127 0.9081 27 1 4.9723 -4.0252 1.9465 28 1 4.8634 -5.5912 1.1080 29 1 6.4456 -5.7102 3.0138 30 1 6.8596 -7.0896 0.9949 31 1 8.3906 -6.5912 1.7531 32 1 7.4920 -6.1015 -0.9329 33 1 9.0233 -5.6028 -0.1749 34 1 7.7712 -3.6394 -1.0269 35 1 9.1767 -3.4047 1.0026 36 1 7.7546 -2.3369 1.0830 37 1 7.1222 -3.3251 3.0107 38 1 8.5442 -4.3925 2.9300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400086421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -31.240769 kcal Electronic energy + Delta-G solvation = -15824.512103 eV Core-core repulsion = 13472.044246 eV Total energy + Delta-G solvation = -2352.467857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51184 -35.51469 -32.65983 -31.46526 -30.88072 -30.70837 -27.22072 -24.24286 -22.56193 -22.06423 -20.96659 -20.65378 -16.82116 -16.46472 -16.40854 -15.73176 -15.56933 -14.39422 -14.01189 -13.51736 -12.89120 -12.75863 -12.38876 -12.09812 -12.07795 -12.01970 -11.96525 -11.93010 -11.69571 -11.24591 -10.96800 -10.64785 -10.51997 -10.33884 -9.94075 -9.70883 -9.66930 -9.56930 -9.22317 -8.56825 -7.38570 -6.04083 -4.01671 3.30060 3.36855 3.39733 4.43684 4.55225 4.60959 4.68367 5.08054 5.28893 5.30746 5.31459 5.37818 5.38381 5.41835 5.43258 5.46927 5.61217 5.66521 5.73684 5.95235 5.99441 6.04288 6.14582 6.15828 6.25145 6.32451 6.37874 6.38503 6.50923 6.61185 6.66374 6.83885 7.06484 7.64329 7.95185 8.40231 8.68789 9.04221 9.58260 11.09324 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049478 B = 0.005889 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.775944 B = 4753.325664 C = 4915.548185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.682 5.682 11 C 0.062 3.938 12 C -0.078 4.078 13 H 0.077 0.923 14 C -0.109 4.109 15 C -0.086 4.086 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.116 4.116 20 C -0.112 4.112 21 H 0.263 0.737 22 H 0.021 0.979 23 H -0.018 1.018 24 H 0.334 0.666 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.439 -9.683 3.168 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.313 5.313 11 C -0.068 4.068 12 C -0.097 4.097 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.105 4.105 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.099 4.099 19 C -0.153 4.153 20 C -0.150 4.150 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.000 1.000 24 H 0.152 0.848 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.223 -9.618 2.483 19.883 hybrid contribution 0.529 1.281 0.883 1.644 sum 17.752 -8.337 3.366 19.899 Atomic orbital electron populations 1.69903 1.06155 1.26837 1.51140 1.24913 0.94749 0.98945 0.94766 0.86819 0.80241 0.83842 0.78588 1.20140 1.21219 1.19303 1.21087 0.89031 0.94783 1.50434 0.90328 1.19984 0.96563 0.85271 0.94611 1.60496 1.04653 1.16569 1.49540 1.22056 0.90414 0.94891 0.99465 1.21140 0.93895 0.96511 0.98145 0.90498 1.21619 0.96438 1.00249 0.96359 1.21040 0.95667 0.95676 0.98100 1.21520 0.99530 0.97717 0.96142 1.21516 1.00069 0.95701 0.97610 1.21025 0.95375 0.95419 0.98128 1.21574 0.99461 0.99627 0.94654 1.21513 0.98873 0.97328 0.97250 0.92681 0.96132 1.00015 0.84798 0.92123 0.96152 0.91867 0.91919 0.91631 0.92178 0.92539 0.92078 0.92444 0.91362 0.92565 0.91688 0.92181 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.10 9.87 -34.44 -0.34 -15.44 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.11 4.51 -4.98 -0.02 4.08 16 10 N -0.68 -14.52 6.49 -115.06 -0.75 -15.27 16 11 C 0.06 1.06 4.41 -3.82 -0.02 1.04 16 12 C -0.08 -1.10 2.43 -90.62 -0.22 -1.32 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.11 -1.44 4.86 -26.73 -0.13 -1.57 16 15 C -0.09 -0.96 3.20 -90.62 -0.29 -1.25 16 16 C -0.11 -1.12 5.71 -26.74 -0.15 -1.27 16 17 C -0.11 -1.14 5.71 -26.73 -0.15 -1.30 16 18 C -0.08 -0.95 2.72 -90.62 -0.25 -1.20 16 19 C -0.12 -1.31 5.36 -26.73 -0.14 -1.46 16 20 C -0.11 -1.24 5.71 -26.73 -0.15 -1.39 16 21 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 22 H 0.02 0.52 7.58 -51.93 -0.39 0.13 16 23 H -0.02 -0.45 7.19 -51.93 -0.37 -0.82 16 24 H 0.33 6.91 7.22 -39.29 -0.28 6.63 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.35 6.71 -51.93 -0.35 0.00 16 27 H 0.06 0.92 6.67 -51.93 -0.35 0.57 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -30.38 284.60 -9.07 -39.44 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.75 Total: 0.71 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.96 Total: -19.15 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.03 Total: -42.61 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.38 -9.07 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400086421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.204 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds