Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47162 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.47391 * 54.99548 * 12 11 10 14 14 C 1.53000 * 109.47061 * 294.99734 * 12 11 10 15 15 C 1.53007 * 109.47133 * 239.99819 * 14 12 11 16 16 C 1.52995 * 109.47358 * 300.00371 * 15 14 12 17 17 C 1.52995 * 109.47503 * 59.99467 * 16 15 14 18 18 C 1.53001 * 109.47151 * 174.99548 * 12 11 10 19 19 C 1.52993 * 109.46811 * 60.00037 * 18 12 11 20 20 C 1.53003 * 109.47695 * 59.99870 * 19 18 12 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 25 25 H 1.09005 * 109.46340 * 299.99822 * 11 10 9 26 26 H 1.08991 * 109.47249 * 59.99593 * 11 10 9 27 27 H 1.08998 * 109.47266 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47383 * 120.00034 * 14 12 11 29 29 H 1.09001 * 109.46971 * 179.97438 * 15 14 12 30 30 H 1.09003 * 109.46746 * 299.99534 * 16 15 14 31 31 H 1.08996 * 109.47091 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47587 * 240.00271 * 17 16 15 33 33 H 1.08997 * 109.47340 * 120.00150 * 17 16 15 34 34 H 1.08992 * 109.47074 * 299.99987 * 18 12 11 35 35 H 1.09005 * 109.47210 * 179.97438 * 19 18 12 36 36 H 1.09000 * 109.47308 * 299.99933 * 19 18 12 37 37 H 1.08991 * 109.47708 * 239.99962 * 20 19 18 38 38 H 1.09000 * 109.47034 * 119.99232 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 4.0011 -2.5791 0.0106 11 6 5.4697 -2.6183 0.0174 12 6 5.9409 -4.0738 0.0229 13 1 5.4959 -4.6031 -0.8198 14 6 5.5121 -4.7438 1.3298 15 6 6.7511 -5.2333 2.0825 16 6 7.5083 -6.2422 1.2167 17 6 7.9371 -5.5723 -0.0903 18 6 7.4657 -4.1167 -0.0958 19 6 8.0903 -3.3739 1.0869 20 6 7.6616 -4.0438 2.3939 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.6224 -3.0938 0.7915 25 1 5.8506 -2.1160 -0.8719 26 1 5.8425 -2.1127 0.9081 27 1 4.9723 -4.0252 1.9465 28 1 4.8634 -5.5912 1.1080 29 1 6.4456 -5.7102 3.0138 30 1 6.8596 -7.0896 0.9949 31 1 8.3906 -6.5912 1.7531 32 1 7.4920 -6.1015 -0.9329 33 1 9.0233 -5.6028 -0.1749 34 1 7.7712 -3.6394 -1.0269 35 1 9.1767 -3.4047 1.0026 36 1 7.7546 -2.3369 1.0830 37 1 7.1222 -3.3251 3.0107 38 1 8.5442 -4.3925 2.9300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400086421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -50.247166 kcal Electronic energy + Delta-G solvation = -15825.336282 eV Core-core repulsion = 13472.044246 eV Total energy + Delta-G solvation = -2353.292036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.48607 -37.17232 -34.71926 -32.63667 -32.03222 -31.67613 -29.06356 -25.70046 -23.46472 -23.38149 -22.54559 -21.85029 -18.99805 -17.47363 -17.35521 -17.08120 -16.68709 -16.13068 -15.51945 -15.20698 -14.52937 -14.10352 -13.96811 -13.57118 -13.12629 -12.94617 -12.89447 -12.87570 -12.83843 -12.71510 -12.42176 -12.23711 -12.03299 -11.85829 -11.56683 -11.30451 -10.83408 -10.65713 -10.64079 -10.57147 -9.12742 -8.32711 -6.37540 1.32751 1.34310 1.45558 2.31833 3.01016 3.41035 3.68062 3.75777 3.84669 4.25794 4.33487 4.41797 4.45222 4.45705 4.51575 4.54325 4.60638 4.70876 4.73236 4.78532 4.79529 4.89444 5.01494 5.12359 5.17534 5.19649 5.31597 5.41147 5.47204 5.48720 5.49639 5.54309 5.58146 5.65016 5.95397 6.54550 6.64158 6.75011 7.27701 8.84137 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049478 B = 0.005889 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.775944 B = 4753.325664 C = 4915.548185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.175 3.825 10 N -0.691 5.691 11 C 0.064 3.936 12 C -0.072 4.072 13 H 0.065 0.935 14 C -0.109 4.109 15 C -0.085 4.085 16 C -0.109 4.109 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.112 4.112 21 H 0.269 0.731 22 H 0.022 0.978 23 H -0.016 1.016 24 H 0.335 0.665 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.152 -9.538 3.426 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.091 4.091 13 H 0.083 0.917 14 C -0.147 4.147 15 C -0.103 4.103 16 C -0.147 4.147 17 C -0.146 4.146 18 C -0.097 4.097 19 C -0.153 4.153 20 C -0.150 4.150 21 H 0.077 0.923 22 H 0.040 0.960 23 H 0.001 0.999 24 H 0.153 0.847 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.953 -9.497 2.740 22.267 hybrid contribution -0.386 1.151 0.798 1.453 sum 19.567 -8.346 3.538 21.565 Atomic orbital electron populations 1.70051 1.08146 1.28301 1.52183 1.25893 0.95672 1.03326 0.94019 0.85642 0.79203 0.78302 0.79330 1.18925 1.20325 1.17698 1.21348 0.91374 0.93484 1.50689 0.94530 1.19738 0.93751 0.87421 0.94497 1.60420 1.07441 1.14477 1.49843 1.22132 0.87587 0.97318 0.99443 1.21075 0.95814 0.94060 0.98153 0.91655 1.21601 0.97529 0.99650 0.95938 1.21040 0.94756 0.96166 0.98344 1.21521 1.00052 0.97252 0.95869 1.21511 1.01110 0.94240 0.97786 1.21014 0.93251 0.96943 0.98529 1.21578 1.00541 0.98676 0.94487 1.21524 0.99393 0.96939 0.97103 0.92256 0.95974 0.99859 0.84706 0.92260 0.95812 0.93706 0.92130 0.90931 0.92033 0.90823 0.92116 0.90712 0.91227 0.90707 0.93089 0.93368 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.53 -31.90 9.87 25.60 0.25 -31.65 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.17 8.76 4.51 85.56 0.39 9.14 16 10 N -0.69 -29.75 6.49 -517.94 -3.36 -33.11 16 11 C 0.06 2.18 4.41 86.30 0.38 2.56 16 12 C -0.07 -1.97 2.43 -10.80 -0.03 -2.00 16 13 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 14 C -0.11 -2.83 4.86 30.60 0.15 -2.68 16 15 C -0.08 -1.72 3.20 -10.79 -0.03 -1.75 16 16 C -0.11 -1.87 5.71 30.59 0.17 -1.70 16 17 C -0.11 -1.92 5.71 30.59 0.17 -1.75 16 18 C -0.08 -1.69 2.72 -10.79 -0.03 -1.72 16 19 C -0.12 -2.34 5.36 30.59 0.16 -2.18 16 20 C -0.11 -2.21 5.71 30.60 0.17 -2.04 16 21 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 22 H 0.02 1.11 7.58 -2.38 -0.02 1.09 16 23 H -0.02 -0.80 7.19 -2.39 -0.02 -0.82 16 24 H 0.33 14.24 7.22 -89.69 -0.65 13.60 16 25 H 0.06 2.01 8.14 -2.38 -0.02 2.00 16 26 H 0.02 0.80 6.71 -2.39 -0.02 0.78 16 27 H 0.04 1.31 6.67 -2.39 -0.02 1.29 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.17 6.54 -2.39 -0.02 1.16 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.66 284.60 1.36 -64.30 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.31 Total: 16.60 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 2.23 Total: -34.79 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.06 Total: -93.06 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -65.66 1.36 -64.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400086421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.050 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds