Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99631 * 2 1 4 4 H 1.48498 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47453 * 300.00510 * 3 2 1 6 6 H 1.48504 * 109.47094 * 60.00365 * 3 2 1 7 7 C 1.37878 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47176 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46847 * 180.02562 * 12 11 10 14 14 C 1.48616 * 111.00190 * 69.87380 * 13 12 11 15 15 C 1.54555 * 104.74727 * 158.77598 * 14 13 12 16 16 C 1.53624 * 104.75892 * 336.19302 * 15 14 13 17 17 C 1.52281 * 121.48624 * 216.26601 * 16 15 14 18 18 C 1.52300 * 121.44415 * 144.01991 * 16 15 14 19 19 C 1.49015 * 111.12822 * 185.36133 * 13 12 11 20 20 H 0.96995 * 120.00868 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47676 * 60.00230 * 9 7 2 22 22 H 1.08997 * 109.47551 * 299.99964 * 9 7 2 23 23 H 1.09000 * 109.47384 * 59.99854 * 10 9 7 24 24 H 1.09000 * 109.47520 * 299.99976 * 10 9 7 25 25 H 1.09000 * 109.46952 * 59.99576 * 11 10 9 26 26 H 1.08999 * 109.46860 * 299.99916 * 11 10 9 27 27 H 1.08993 * 109.47306 * 59.99778 * 12 11 10 28 28 H 1.08999 * 109.46967 * 299.99618 * 12 11 10 29 29 H 1.09002 * 110.40410 * 39.92313 * 14 13 12 30 30 H 1.08998 * 110.39946 * 277.62207 * 14 13 12 31 31 H 1.08998 * 110.38512 * 95.01809 * 15 14 13 32 32 H 1.09008 * 110.37882 * 217.37418 * 15 14 13 33 33 H 1.08999 * 117.51373 * 356.60775 * 17 16 15 34 34 H 1.08999 * 117.51932 * 141.74163 * 17 16 15 35 35 H 1.09000 * 117.51312 * 218.31940 * 18 16 15 36 36 H 1.08990 * 117.51670 * 3.40162 * 18 16 15 37 37 H 1.09005 * 110.43254 * 82.83752 * 19 13 12 38 38 H 1.09003 * 110.43512 * 320.31580 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0005 13 7 1.7405 -7.4221 -0.0018 14 6 1.0621 -7.6443 -1.3053 15 6 0.8207 -9.1695 -1.3683 16 6 1.8782 -9.7722 -0.4309 17 6 2.5577 -11.0979 -0.7464 18 6 1.5766 -10.9952 0.4251 19 6 2.6703 -8.5792 0.1287 20 1 -0.4851 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8896 23 1 2.8722 -3.6042 0.8894 24 1 2.8722 -3.6042 -0.8905 25 1 0.8542 -5.0445 -0.8914 26 1 0.8537 -5.0451 0.8886 27 1 3.1010 -6.0921 0.8898 28 1 3.1022 -6.0920 -0.8901 29 1 1.7043 -7.3269 -2.1269 30 1 0.1138 -7.1079 -1.3363 31 1 -0.1817 -9.4102 -1.0143 32 1 0.9628 -9.5347 -2.3855 33 1 2.2261 -11.6348 -1.6352 34 1 3.6176 -11.1896 -0.5091 35 1 1.9914 -11.0191 1.4328 36 1 0.5997 -11.4638 0.3073 37 1 2.9237 -8.7477 1.1754 38 1 3.5721 -8.4110 -0.4600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400273776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = 5.037292 kcal Electronic energy + Delta-G solvation = -14875.772984 eV Core-core repulsion = 12524.878262 eV Total energy + Delta-G solvation = -2350.894722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58712 -36.34753 -34.24887 -32.31782 -30.31098 -28.48139 -26.30228 -24.21761 -22.68149 -22.25739 -20.56653 -20.03762 -19.08531 -16.19970 -15.83883 -15.61089 -14.94457 -14.69678 -14.40833 -14.06474 -13.45403 -12.83448 -12.67112 -12.32734 -11.81712 -11.81152 -11.65197 -11.40441 -11.27870 -11.08398 -10.91782 -10.53780 -10.44337 -10.36820 -10.31443 -9.83845 -9.58114 -9.22220 -8.95830 -8.39227 -8.30190 -5.95181 -3.97268 3.33525 3.40710 3.45117 3.51108 4.09475 4.26180 4.49973 4.60219 4.73872 4.78150 5.15939 5.27573 5.40204 5.41332 5.45488 5.46771 5.54962 5.64324 5.68789 5.79555 5.83175 5.90716 5.94658 6.00868 6.03910 6.18085 6.29379 6.54830 6.83321 6.94402 7.01779 7.11118 7.28252 7.74615 7.90666 8.06304 8.49216 9.10552 9.66469 11.16222 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.083130 B = 0.003865 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.740973 B = 7242.051099 C = 7388.833996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.045 3.955 13 N -0.509 5.509 14 C 0.033 3.967 15 C -0.089 4.089 16 C -0.130 4.130 17 C -0.172 4.172 18 C -0.163 4.163 19 C 0.067 3.933 20 H 0.259 0.741 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -20.625 -1.754 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.083 4.083 13 N -0.232 5.232 14 C -0.095 4.095 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.209 4.209 18 C -0.200 4.200 19 C -0.061 4.061 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.270 -20.451 -1.306 20.752 hybrid contribution 1.040 0.978 -0.673 1.579 sum 4.310 -19.473 -1.980 20.042 Atomic orbital electron populations 1.69977 1.06038 1.26385 1.51168 1.25038 0.94845 0.99232 0.95469 0.86558 0.80119 0.83909 0.77543 1.19776 1.21059 1.21026 1.21334 0.93051 0.91221 1.50121 0.92730 1.19092 0.94035 0.91335 0.97162 1.21604 0.99093 0.94042 1.00014 1.21609 0.97791 0.93460 1.02051 1.22410 0.96191 0.89144 1.00509 1.65515 1.25423 1.01557 1.30728 1.23134 1.00140 0.95375 0.90813 1.21824 0.98092 0.94683 0.98067 1.21616 1.00378 0.89351 1.01706 1.22929 0.98424 0.99504 1.00057 1.22914 1.00412 1.00806 0.95837 1.22566 0.93751 0.89211 1.00554 0.93120 0.96736 0.96592 0.93474 0.93745 0.92681 0.91692 0.90989 0.94929 0.93763 0.89708 0.90799 0.91312 0.88787 0.88820 0.88702 0.88774 0.90278 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 11 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 12 C 0.05 0.68 4.82 -3.82 -0.02 0.67 16 13 N -0.51 -7.09 5.38 -229.82 -1.24 -8.33 16 14 C 0.03 0.42 5.74 -2.06 -0.01 0.41 16 15 C -0.09 -0.93 6.77 -25.59 -0.17 -1.10 16 16 C -0.13 -1.33 2.52 -154.52 -0.39 -1.72 16 17 C -0.17 -1.43 10.29 -27.02 -0.28 -1.71 16 18 C -0.16 -1.43 10.27 -27.01 -0.28 -1.71 16 19 C 0.07 0.79 6.30 -2.26 -0.01 0.77 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.99 7.26 -51.93 -0.38 0.61 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 28 H 0.03 0.48 7.88 -51.93 -0.41 0.07 16 29 H 0.04 0.56 7.81 -51.93 -0.41 0.15 16 30 H 0.08 1.10 7.77 -51.93 -0.40 0.70 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.90 8.12 -51.93 -0.42 0.47 16 38 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.64 306.78 -9.93 -40.57 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -7.05 Total: -4.56 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.99 Total: -22.52 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.50 Total: -35.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.64 -9.93 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400273776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.611 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds