Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99631 * 2 1 4 4 H 1.48498 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47453 * 300.00510 * 3 2 1 6 6 H 1.48504 * 109.47094 * 60.00365 * 3 2 1 7 7 C 1.37878 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47176 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46847 * 180.02562 * 12 11 10 14 14 C 1.48616 * 111.00190 * 69.87380 * 13 12 11 15 15 C 1.54555 * 104.74727 * 158.77598 * 14 13 12 16 16 C 1.53624 * 104.75892 * 336.19302 * 15 14 13 17 17 C 1.52281 * 121.48624 * 216.26601 * 16 15 14 18 18 C 1.52300 * 121.44415 * 144.01991 * 16 15 14 19 19 C 1.49015 * 111.12822 * 185.36133 * 13 12 11 20 20 H 0.96995 * 120.00868 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47676 * 60.00230 * 9 7 2 22 22 H 1.08997 * 109.47551 * 299.99964 * 9 7 2 23 23 H 1.09000 * 109.47384 * 59.99854 * 10 9 7 24 24 H 1.09000 * 109.47520 * 299.99976 * 10 9 7 25 25 H 1.09000 * 109.46952 * 59.99576 * 11 10 9 26 26 H 1.08999 * 109.46860 * 299.99916 * 11 10 9 27 27 H 1.08993 * 109.47306 * 59.99778 * 12 11 10 28 28 H 1.08999 * 109.46967 * 299.99618 * 12 11 10 29 29 H 1.09002 * 110.40410 * 39.92313 * 14 13 12 30 30 H 1.08998 * 110.39946 * 277.62207 * 14 13 12 31 31 H 1.08998 * 110.38512 * 95.01809 * 15 14 13 32 32 H 1.09008 * 110.37882 * 217.37418 * 15 14 13 33 33 H 1.08999 * 117.51373 * 356.60775 * 17 16 15 34 34 H 1.08999 * 117.51932 * 141.74163 * 17 16 15 35 35 H 1.09000 * 117.51312 * 218.31940 * 18 16 15 36 36 H 1.08990 * 117.51670 * 3.40162 * 18 16 15 37 37 H 1.09005 * 110.43254 * 82.83752 * 19 13 12 38 38 H 1.09003 * 110.43512 * 320.31580 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 6 2.4749 -6.1499 -0.0005 13 7 1.7405 -7.4221 -0.0018 14 6 1.0621 -7.6443 -1.3053 15 6 0.8207 -9.1695 -1.3683 16 6 1.8782 -9.7722 -0.4309 17 6 2.5577 -11.0979 -0.7464 18 6 1.5766 -10.9952 0.4251 19 6 2.6703 -8.5792 0.1287 20 1 -0.4851 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8896 23 1 2.8722 -3.6042 0.8894 24 1 2.8722 -3.6042 -0.8905 25 1 0.8542 -5.0445 -0.8914 26 1 0.8537 -5.0451 0.8886 27 1 3.1010 -6.0921 0.8898 28 1 3.1022 -6.0920 -0.8901 29 1 1.7043 -7.3269 -2.1269 30 1 0.1138 -7.1079 -1.3363 31 1 -0.1817 -9.4102 -1.0143 32 1 0.9628 -9.5347 -2.3855 33 1 2.2261 -11.6348 -1.6352 34 1 3.6176 -11.1896 -0.5091 35 1 1.9914 -11.0191 1.4328 36 1 0.5997 -11.4638 0.3073 37 1 2.9237 -8.7477 1.1754 38 1 3.5721 -8.4110 -0.4600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400273776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = -12.709046 kcal Electronic energy + Delta-G solvation = -14876.542523 eV Core-core repulsion = 12524.878262 eV Total energy + Delta-G solvation = -2351.664261 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47546 -37.48182 -35.94231 -34.20608 -31.58751 -29.90444 -27.65683 -25.79748 -23.68947 -23.32002 -21.98902 -21.57753 -19.94033 -18.42890 -16.85745 -16.71504 -16.40864 -16.12924 -15.58937 -15.18914 -14.64053 -14.38344 -13.95820 -13.88145 -13.45955 -13.06114 -12.86852 -12.74240 -12.53634 -12.34118 -12.22893 -12.13460 -12.01782 -11.79177 -11.36924 -11.29472 -11.22409 -10.94028 -10.56840 -10.56432 -9.44768 -8.20305 -6.32048 1.39368 1.40001 1.53606 2.40622 2.75387 3.12282 3.13425 3.47703 3.75619 3.93224 4.04735 4.08035 4.19167 4.27821 4.50918 4.55131 4.63083 4.67756 4.74646 4.80079 4.81053 4.84205 4.94012 4.98655 5.07362 5.12816 5.18958 5.22950 5.26607 5.29422 5.33956 5.54134 5.75922 5.85478 5.90221 6.06986 6.25209 6.85569 7.37356 8.91897 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.083130 B = 0.003865 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.740973 B = 7242.051099 C = 7388.833996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.100 4.100 12 C 0.056 3.944 13 N -0.524 5.524 14 C 0.029 3.971 15 C -0.083 4.083 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.162 4.162 19 C 0.067 3.933 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.011 1.011 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -21.496 -1.969 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.072 4.072 13 N -0.248 5.248 14 C -0.099 4.099 15 C -0.121 4.121 16 C -0.148 4.148 17 C -0.195 4.195 18 C -0.199 4.199 19 C -0.060 4.060 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.697 -21.344 -1.521 21.908 hybrid contribution 0.550 1.226 -0.599 1.471 sum 5.247 -20.118 -2.120 20.898 Atomic orbital electron populations 1.70112 1.07882 1.27737 1.51787 1.26041 0.95818 1.03546 0.94715 0.85359 0.79056 0.78543 0.77839 1.18500 1.20274 1.20278 1.21769 0.93583 0.92474 1.50397 0.92145 1.19019 0.94499 0.93323 0.94579 1.21407 0.97987 0.93589 1.00479 1.21421 0.97935 0.93197 1.01258 1.22194 0.95234 0.88769 1.01031 1.65452 1.26116 1.01672 1.31592 1.23171 0.99413 0.97084 0.90236 1.21786 0.98312 0.92917 0.99099 1.21616 1.00887 0.89609 1.02733 1.23014 0.98788 0.97470 1.00180 1.23001 1.01072 0.99605 0.96194 1.22591 0.93621 0.88888 1.00912 0.92755 0.99288 0.99281 0.92934 0.93146 0.93174 0.92837 0.90434 0.94411 0.93857 0.90889 0.90751 0.89869 0.87629 0.88040 0.88411 0.88118 0.90069 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16 11 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 12 C 0.06 1.64 4.82 86.30 0.42 2.06 16 13 N -0.52 -14.20 5.38 -881.01 -4.74 -18.94 16 14 C 0.03 0.71 5.74 86.50 0.50 1.21 16 15 C -0.08 -1.62 6.77 31.33 0.21 -1.40 16 16 C -0.15 -2.74 2.52 -52.19 -0.13 -2.87 16 17 C -0.16 -2.19 10.29 30.41 0.31 -1.88 16 18 C -0.16 -2.49 10.27 30.41 0.31 -2.17 16 19 C 0.07 1.48 6.30 86.14 0.54 2.02 16 20 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 22 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.84 7.26 -2.39 -0.02 1.83 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 28 H 0.04 1.07 7.88 -2.39 -0.02 1.05 16 29 H 0.04 1.06 7.81 -2.39 -0.02 1.04 16 30 H 0.07 1.93 7.77 -2.39 -0.02 1.91 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.71 8.12 -2.38 -0.02 1.69 16 38 H 0.05 1.03 8.00 -2.39 -0.02 1.02 16 Total: -1.00 -65.49 306.78 1.88 -63.61 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.98 Total: 6.99 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.32 Total: -40.67 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -4.45 Total: -77.12 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.49 1.88 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400273776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.901 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds