Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47031 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00245 * 2 1 3 5 5 H 1.09001 * 110.64271 * 304.36845 * 4 2 1 6 6 C 1.54589 * 110.72321 * 181.21714 * 4 2 1 7 7 C 1.54000 * 105.13633 * 219.68196 * 6 4 2 8 8 N 1.47903 * 107.05928 * 358.77599 * 7 6 4 9 9 C 1.48531 * 105.81803 * 25.33199 * 8 7 6 10 10 N 1.46499 * 109.47511 * 119.99868 * 2 1 3 11 11 C 1.36929 * 120.00028 * 240.03054 * 10 2 1 12 12 H 1.07996 * 120.00274 * 331.22187 * 11 10 2 13 13 C 1.38814 * 119.99951 * 151.49923 * 11 10 2 14 14 N 1.31624 * 119.99720 * 337.77798 * 13 11 10 15 15 Si 1.86797 * 120.00115 * 157.77816 * 13 11 10 16 16 H 1.48502 * 109.47223 * 60.00120 * 15 13 11 17 17 H 1.48502 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47140 * 299.99643 * 15 13 11 19 19 C 1.46500 * 119.99458 * 60.02467 * 10 2 1 20 20 C 1.47200 * 109.47519 * 274.48703 * 19 10 2 21 21 N 4.07095 * 57.66314 * 130.21354 * 2 1 3 22 22 H 1.08996 * 109.47657 * 53.86252 * 1 2 3 23 23 H 1.09002 * 109.46875 * 173.86448 * 1 2 3 24 24 H 1.09001 * 109.47347 * 293.86293 * 1 2 3 25 25 H 1.09000 * 110.31002 * 338.59787 * 6 4 2 26 26 H 1.09000 * 110.30940 * 100.66832 * 6 4 2 27 27 H 1.09004 * 109.91493 * 118.12981 * 7 6 4 28 28 H 1.09001 * 109.91901 * 239.42175 * 7 6 4 29 29 H 1.00902 * 110.99549 * 264.81524 * 8 7 6 30 30 H 1.09003 * 110.66322 * 202.35993 * 9 8 7 31 31 H 1.08999 * 110.67047 * 79.22846 * 9 8 7 32 32 H 0.97004 * 119.99695 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47309 * 34.49183 * 19 10 2 34 34 H 1.09007 * 109.46893 * 154.48947 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6252 -1.7275 -1.3083 6 6 3.5853 -0.7647 -1.2633 7 6 3.9813 -0.5152 -2.7304 8 7 2.7266 -0.3714 -3.5001 9 6 1.7047 0.0901 -2.5260 10 7 2.0184 -0.6906 1.1961 11 6 2.8052 -0.0249 2.0977 12 1 3.4395 0.7842 1.7670 13 6 2.7917 -0.3937 3.4359 14 7 1.7589 -1.0439 3.9289 15 14 4.2392 0.0327 4.5369 16 1 4.4165 1.5067 4.5728 17 1 3.9804 -0.4678 5.9109 18 1 5.4712 -0.6012 4.0025 19 6 1.6649 -2.0933 1.4276 20 6 0.3597 -2.1652 2.1044 21 7 -0.6475 -2.2207 2.6266 22 1 -0.3634 0.6060 -0.8299 23 1 -0.3633 -1.0218 -0.1098 24 1 -0.3634 0.4157 0.9398 25 1 3.9916 0.0184 -0.6232 26 1 3.9392 -1.7421 -0.9353 27 1 4.5700 0.3991 -2.8057 28 1 4.5545 -1.3613 -3.1093 29 1 2.4568 -1.2489 -3.9189 30 1 0.7013 -0.1469 -2.8799 31 1 1.8056 1.1593 -2.3400 32 1 1.7493 -1.3013 4.8642 33 1 1.6085 -2.6161 0.4729 34 1 2.4250 -2.5610 2.0536 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400686973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = 44.773051 kcal Electronic energy + Delta-G solvation = -15939.660143 eV Core-core repulsion = 13486.948149 eV Total energy + Delta-G solvation = -2452.711993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.79177 -36.31674 -34.23096 -32.47029 -30.03869 -29.12158 -27.40938 -26.91169 -23.75954 -21.55921 -20.79593 -19.10150 -17.35099 -16.39553 -16.07401 -15.29534 -14.36738 -14.18166 -13.47209 -13.43796 -13.17974 -12.39191 -12.20874 -12.12177 -11.99186 -11.41263 -11.35585 -11.24023 -10.93424 -10.91072 -10.70366 -10.47288 -10.28181 -10.14180 -10.08947 -9.85051 -9.64359 -8.75492 -8.41684 -7.02823 -5.95285 -3.42852 3.31621 3.39229 3.39902 4.18135 4.41192 4.49073 4.52088 5.10879 5.12867 5.25344 5.30989 5.52448 5.62851 5.71520 5.79995 5.83138 6.05692 6.10576 6.17663 6.23263 6.36579 6.37817 6.52649 6.61028 6.69548 6.80735 6.91922 6.93948 7.09845 7.49499 7.69267 8.22794 8.95558 9.30036 9.62379 10.13022 11.10359 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026776 B = 0.010362 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.467983 B = 2701.572391 C = 3399.536353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.180 3.820 3 H 0.070 0.930 4 C -0.132 4.132 5 H 0.067 0.933 6 C -0.131 4.131 7 C 0.038 3.962 8 N -0.680 5.680 9 C 0.049 3.951 10 N -0.570 5.570 11 C -0.270 4.270 12 H 0.074 0.926 13 C 0.011 3.989 14 N -0.888 5.888 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.281 1.281 19 C 0.259 3.741 20 C 0.247 3.753 21 N -0.503 5.503 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.331 0.669 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -0.732 -11.457 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.073 3.927 3 H 0.088 0.912 4 C -0.154 4.154 5 H 0.086 0.914 6 C -0.170 4.170 7 C -0.091 4.091 8 N -0.306 5.306 9 C -0.081 4.081 10 N -0.290 5.290 11 C -0.399 4.399 12 H 0.091 0.909 13 C -0.190 4.190 14 N -0.530 5.530 15 Si 0.733 3.267 16 H -0.208 1.208 17 H -0.218 1.218 18 H -0.208 1.208 19 C 0.128 3.872 20 C -0.072 4.072 21 N -0.185 5.185 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.386 -0.188 -10.826 11.088 hybrid contribution 0.852 -0.569 1.358 1.701 sum 3.238 -0.757 -9.468 10.035 Atomic orbital electron populations 1.22329 0.98359 1.00556 1.00917 1.20467 0.91414 0.95380 0.85456 0.91171 1.23190 0.95792 0.99760 0.96681 0.91450 1.22624 0.95567 1.02880 0.95890 1.22794 0.92721 1.00840 0.92795 1.62791 1.03847 1.33499 1.30510 1.23139 0.94665 1.00122 0.90200 1.43964 1.57012 1.06195 1.21878 1.19084 1.16360 1.17166 0.87306 0.90862 1.25102 0.96949 1.00228 0.96688 1.69847 1.26609 1.42559 1.13936 0.86363 0.82605 0.78246 0.79525 1.20820 1.21794 1.20751 1.17992 0.86795 0.87328 0.95043 1.30272 0.94372 0.91043 0.91470 1.80771 1.15874 1.10413 1.11431 0.93879 0.93812 0.92524 0.90399 0.91769 0.91188 0.92388 0.85455 0.91336 0.90347 0.93012 0.92385 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.06 37.16 0.30 -2.64 16 2 C 0.18 3.25 2.13 -67.93 -0.14 3.11 16 3 H 0.07 1.32 7.83 -51.93 -0.41 0.92 16 4 C -0.13 -1.94 2.30 -88.76 -0.20 -2.14 16 5 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 6 C -0.13 -1.87 6.13 -25.37 -0.16 -2.03 16 7 C 0.04 0.47 7.51 -2.75 -0.02 0.45 16 8 N -0.68 -8.40 7.51 -110.08 -0.83 -9.23 16 9 C 0.05 0.63 6.32 -1.90 -0.01 0.62 16 10 N -0.57 -12.24 2.03 -168.97 -0.34 -12.58 16 11 C -0.27 -6.56 9.43 -15.06 -0.14 -6.71 16 12 H 0.07 1.76 7.92 -52.49 -0.42 1.34 16 13 C 0.01 0.28 4.80 -17.43 -0.08 0.20 16 14 N -0.89 -24.42 9.91 55.49 0.55 -23.87 16 15 Si 0.90 20.49 29.61 -169.99 -5.03 15.46 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.26 5.39 5.07 -6.83 -0.03 5.35 16 20 C 0.25 5.88 11.17 -20.76 -0.23 5.64 16 21 N -0.50 -12.98 18.54 42.15 0.78 -12.20 16 22 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 23 H 0.04 0.80 7.14 -51.93 -0.37 0.42 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.33 3.58 8.92 -39.29 -0.35 3.23 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.06 8.00 -51.93 -0.42 0.65 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.01 6.57 -51.93 -0.34 0.67 16 34 H 0.09 2.01 7.32 -51.93 -0.38 1.63 16 LS Contribution 277.10 15.07 4.18 4.18 Total: -1.00 -28.38 277.10 -6.52 -34.90 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.10 Total: 1.49 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.73 Total: 1.86 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.16 Total: -57.89 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.38 -6.52 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400686973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.676 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds