Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47031 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00245 * 2 1 3 5 5 H 1.09001 * 110.64271 * 304.36845 * 4 2 1 6 6 C 1.54589 * 110.72321 * 181.21714 * 4 2 1 7 7 C 1.54000 * 105.13633 * 219.68196 * 6 4 2 8 8 N 1.47903 * 107.05928 * 358.77599 * 7 6 4 9 9 C 1.48531 * 105.81803 * 25.33199 * 8 7 6 10 10 N 1.46499 * 109.47511 * 119.99868 * 2 1 3 11 11 C 1.36929 * 120.00028 * 240.03054 * 10 2 1 12 12 H 1.07996 * 120.00274 * 331.22187 * 11 10 2 13 13 C 1.38814 * 119.99951 * 151.49923 * 11 10 2 14 14 N 1.31624 * 119.99720 * 337.77798 * 13 11 10 15 15 Si 1.86797 * 120.00115 * 157.77816 * 13 11 10 16 16 H 1.48502 * 109.47223 * 60.00120 * 15 13 11 17 17 H 1.48502 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47140 * 299.99643 * 15 13 11 19 19 C 1.46500 * 119.99458 * 60.02467 * 10 2 1 20 20 C 1.47200 * 109.47519 * 274.48703 * 19 10 2 21 21 N 4.07095 * 57.66314 * 130.21354 * 2 1 3 22 22 H 1.08996 * 109.47657 * 53.86252 * 1 2 3 23 23 H 1.09002 * 109.46875 * 173.86448 * 1 2 3 24 24 H 1.09001 * 109.47347 * 293.86293 * 1 2 3 25 25 H 1.09000 * 110.31002 * 338.59787 * 6 4 2 26 26 H 1.09000 * 110.30940 * 100.66832 * 6 4 2 27 27 H 1.09004 * 109.91493 * 118.12981 * 7 6 4 28 28 H 1.09001 * 109.91901 * 239.42175 * 7 6 4 29 29 H 1.00902 * 110.99549 * 264.81524 * 8 7 6 30 30 H 1.09003 * 110.66322 * 202.35993 * 9 8 7 31 31 H 1.08999 * 110.67047 * 79.22846 * 9 8 7 32 32 H 0.97004 * 119.99695 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47309 * 34.49183 * 19 10 2 34 34 H 1.09007 * 109.46893 * 154.48947 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6252 -1.7275 -1.3083 6 6 3.5853 -0.7647 -1.2633 7 6 3.9813 -0.5152 -2.7304 8 7 2.7266 -0.3714 -3.5001 9 6 1.7047 0.0901 -2.5260 10 7 2.0184 -0.6906 1.1961 11 6 2.8052 -0.0249 2.0977 12 1 3.4395 0.7842 1.7670 13 6 2.7917 -0.3937 3.4359 14 7 1.7589 -1.0439 3.9289 15 14 4.2392 0.0327 4.5369 16 1 4.4165 1.5067 4.5728 17 1 3.9804 -0.4678 5.9109 18 1 5.4712 -0.6012 4.0025 19 6 1.6649 -2.0933 1.4276 20 6 0.3597 -2.1652 2.1044 21 7 -0.6475 -2.2207 2.6266 22 1 -0.3634 0.6060 -0.8299 23 1 -0.3633 -1.0218 -0.1098 24 1 -0.3634 0.4157 0.9398 25 1 3.9916 0.0184 -0.6232 26 1 3.9392 -1.7421 -0.9353 27 1 4.5700 0.3991 -2.8057 28 1 4.5545 -1.3613 -3.1093 29 1 2.4568 -1.2489 -3.9189 30 1 0.7013 -0.1469 -2.8799 31 1 1.8056 1.1593 -2.3400 32 1 1.7493 -1.3013 4.8642 33 1 1.6085 -2.6161 0.4729 34 1 2.4250 -2.5610 2.0536 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400686973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = 26.267866 kcal Electronic energy + Delta-G solvation = -15940.462588 eV Core-core repulsion = 13486.948149 eV Total energy + Delta-G solvation = -2453.514438 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04531 -37.88221 -36.07342 -34.18128 -31.70495 -30.22556 -28.83390 -28.49936 -25.49364 -22.82842 -21.99744 -20.47874 -19.16557 -17.80898 -17.42982 -17.01937 -15.90525 -15.68848 -15.15353 -14.66668 -14.39515 -13.99658 -13.83958 -13.68429 -13.28691 -13.07834 -13.02669 -12.91214 -12.64189 -12.33939 -12.19066 -12.11752 -11.84115 -11.63454 -11.55120 -11.32911 -11.12196 -10.59884 -9.48597 -8.83424 -7.90582 -5.37305 1.50275 1.53685 1.59032 2.36241 2.55036 2.64756 3.28143 3.47552 3.70041 3.90013 4.00975 4.11066 4.39005 4.43568 4.59935 4.68654 4.71267 4.78087 4.87645 4.97242 5.05175 5.08824 5.16956 5.23693 5.32916 5.42448 5.54560 5.66200 5.71788 5.94454 6.33699 6.62275 7.06798 7.43543 7.79268 8.25627 9.12074 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026776 B = 0.010362 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.467983 B = 2701.572391 C = 3399.536353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.179 3.821 3 H 0.060 0.940 4 C -0.122 4.122 5 H 0.075 0.925 6 C -0.128 4.128 7 C 0.045 3.955 8 N -0.681 5.681 9 C 0.055 3.945 10 N -0.579 5.579 11 C -0.259 4.259 12 H 0.076 0.924 13 C -0.038 4.038 14 N -0.921 5.921 15 Si 0.959 3.041 16 H -0.282 1.282 17 H -0.307 1.307 18 H -0.271 1.271 19 C 0.260 3.740 20 C 0.259 3.741 21 N -0.546 5.546 22 H 0.074 0.926 23 H 0.042 0.958 24 H 0.014 0.986 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.343 0.657 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.246 0.754 33 H 0.102 0.898 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -0.844 -13.682 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 H 0.078 0.922 4 C -0.144 4.144 5 H 0.094 0.906 6 C -0.167 4.167 7 C -0.085 4.085 8 N -0.308 5.308 9 C -0.075 4.075 10 N -0.299 5.299 11 C -0.389 4.389 12 H 0.093 0.907 13 C -0.235 4.235 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.208 1.208 17 H -0.234 1.234 18 H -0.196 1.196 19 C 0.129 3.871 20 C -0.059 4.059 21 N -0.228 5.228 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.283 -0.288 -13.101 13.509 hybrid contribution 0.587 -0.476 1.969 2.109 sum 3.870 -0.764 -11.132 11.810 Atomic orbital electron populations 1.22202 0.98188 1.00719 0.99906 1.20595 0.91355 0.95153 0.85611 0.92201 1.23041 0.95975 0.99894 0.95496 0.90644 1.22569 0.95167 1.01978 0.96998 1.22735 0.92924 1.01548 0.91309 1.62752 1.03538 1.34439 1.30026 1.23079 0.95712 0.99453 0.89285 1.44166 1.56812 1.06699 1.22188 1.19357 1.15663 1.16265 0.87577 0.90670 1.25679 0.98674 1.01173 0.97974 1.69994 1.28296 1.44983 1.13243 0.85469 0.80620 0.77753 0.77290 1.20815 1.23440 1.19644 1.18227 0.84970 0.87360 0.96497 1.30932 0.94546 0.89783 0.90610 1.80760 1.17455 1.11819 1.12782 0.90711 0.93901 0.96694 0.92698 0.91835 0.91458 0.90509 0.84098 0.89765 0.90995 0.94411 0.88078 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 8.06 71.98 0.58 -4.67 16 2 C 0.18 6.18 2.13 44.99 0.10 6.28 16 3 H 0.06 2.19 7.83 -2.38 -0.02 2.17 16 4 C -0.12 -3.23 2.30 -9.59 -0.02 -3.26 16 5 H 0.08 1.92 6.95 -2.39 -0.02 1.90 16 6 C -0.13 -3.36 6.13 31.47 0.19 -3.16 16 7 C 0.04 0.96 7.51 86.45 0.65 1.61 16 8 N -0.68 -14.33 7.51 -502.18 -3.77 -18.10 16 9 C 0.05 1.23 6.32 86.65 0.55 1.78 16 10 N -0.58 -24.28 2.03 -688.51 -1.40 -25.68 16 11 C -0.26 -12.43 9.43 84.04 0.79 -11.64 16 12 H 0.08 3.55 7.92 -2.91 -0.02 3.53 16 13 C -0.04 -1.96 4.80 84.86 0.41 -1.55 16 14 N -0.92 -51.46 9.91 21.65 0.21 -51.24 16 15 Si 0.96 42.41 29.61 68.60 2.03 44.44 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 C 0.26 10.51 5.07 84.57 0.43 10.94 16 20 C 0.26 12.29 11.17 89.44 1.00 13.29 16 21 N -0.55 -28.44 18.54 20.00 0.37 -28.06 16 22 H 0.07 2.09 7.73 -2.39 -0.02 2.08 16 23 H 0.04 1.48 7.14 -2.39 -0.02 1.46 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.34 6.01 8.92 -89.69 -0.80 5.21 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 32 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.10 3.22 6.57 -2.39 -0.02 3.20 16 34 H 0.08 3.47 7.32 -2.38 -0.02 3.46 16 Total: -1.00 -60.88 277.10 2.40 -58.47 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.29 Total: 10.54 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.67 Total: 9.62 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.59 Total: -123.08 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -60.88 2.40 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400686973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.742 kcal (2) G-P(sol) polarization free energy of solvation -60.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds