Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.46885 * 2 1 4 4 C 1.53002 * 109.47542 * 119.99959 * 2 1 3 5 5 H 1.09004 * 110.89934 * 57.58753 * 4 2 1 6 6 C 1.55137 * 110.99437 * 293.72405 * 4 2 1 7 7 C 1.54312 * 103.02085 * 206.25342 * 6 4 2 8 8 N 1.47446 * 107.23301 * 22.27863 * 7 6 4 9 9 C 1.47838 * 108.56735 * 0.99543 * 8 7 6 10 10 N 1.46503 * 109.47329 * 240.00211 * 2 1 3 11 11 C 1.36942 * 119.99832 * 116.46697 * 10 2 1 12 12 H 1.07995 * 119.99532 * 151.00390 * 11 10 2 13 13 C 1.38805 * 120.00168 * 330.99616 * 11 10 2 14 14 N 1.31616 * 120.00505 * 342.67032 * 13 11 10 15 15 Si 1.86808 * 119.99895 * 162.66203 * 13 11 10 16 16 H 1.48497 * 109.46657 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46998 * 120.00432 * 15 13 11 18 18 H 1.48499 * 109.46984 * 240.00682 * 15 13 11 19 19 C 1.46499 * 119.99912 * 296.47052 * 10 2 1 20 20 C 1.47207 * 109.47088 * 93.62026 * 19 10 2 21 21 N 4.17802 * 61.93428 * 229.90662 * 2 1 3 22 22 H 1.09000 * 109.47616 * 59.99680 * 1 2 3 23 23 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47310 * 299.99327 * 1 2 3 25 25 H 1.09001 * 110.70713 * 87.86516 * 6 4 2 26 26 H 1.09000 * 110.70190 * 324.63529 * 6 4 2 27 27 H 1.09001 * 109.88360 * 262.87540 * 7 6 4 28 28 H 1.08997 * 110.02829 * 141.76563 * 7 6 4 29 29 H 1.00895 * 110.99714 * 238.71847 * 8 7 6 30 30 H 1.08996 * 110.37726 * 94.73040 * 9 8 7 31 31 H 1.09001 * 110.37105 * 217.07594 * 9 8 7 32 32 H 0.97000 * 120.00877 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.47280 * 213.61615 * 19 10 2 34 34 H 1.08995 * 109.47355 * 333.62319 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6551 -1.7400 1.2945 6 6 1.6759 0.0680 2.5343 7 6 2.7713 -0.3660 3.5308 8 7 3.9168 -0.8487 2.7379 9 6 3.5881 -0.7101 1.3032 10 7 2.0183 -0.6906 -1.1962 11 6 2.7449 -0.0057 -2.1334 12 1 3.4783 -0.5245 -2.7328 13 6 2.5386 1.3551 -2.3132 14 7 1.4431 1.9211 -1.8529 15 14 3.8159 2.3832 -3.2082 16 1 4.9470 1.5154 -3.6237 17 1 3.2000 3.0021 -4.4094 18 1 4.3158 3.4492 -2.3032 19 6 1.7293 -2.1137 -1.3897 20 6 0.5073 -2.2608 -2.1971 21 7 -0.4358 -2.3744 -2.8203 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.6891 -0.2199 2.8968 26 1 1.7231 1.1418 2.3533 27 1 2.3968 -1.1676 4.1674 28 1 3.0757 0.4824 4.1437 29 1 4.1377 -1.8061 2.9675 30 1 3.9746 0.2321 0.9147 31 1 3.9936 -1.5494 0.7382 32 1 1.2990 2.8721 -1.9782 33 1 2.5646 -2.5872 -1.9054 34 1 1.5837 -2.5900 -0.4202 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400686980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = 46.047225 kcal Electronic energy + Delta-G solvation = -16008.080391 eV Core-core repulsion = 13555.423650 eV Total energy + Delta-G solvation = -2452.656741 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.59962 -36.35085 -34.85053 -31.90296 -30.90096 -28.65759 -27.50800 -26.79996 -23.51128 -21.30661 -20.74612 -19.12096 -17.34434 -16.53995 -16.24533 -14.92323 -14.40565 -14.11197 -13.70576 -13.30267 -12.93303 -12.65544 -12.26822 -12.01886 -11.74433 -11.69273 -11.48764 -11.19214 -10.95715 -10.88101 -10.85921 -10.57506 -10.25486 -10.19490 -9.98136 -9.80463 -9.49885 -8.61284 -8.09496 -6.96859 -5.96321 -3.45371 3.30984 3.39977 3.41326 3.71168 3.77748 4.41048 4.65751 5.07205 5.09563 5.17460 5.39568 5.48160 5.54881 5.73733 5.93209 6.05150 6.15079 6.23921 6.26539 6.32434 6.45718 6.52959 6.60461 6.74659 6.79582 6.94202 7.22546 7.53545 7.58083 7.72506 7.74105 8.27364 8.59951 9.03099 9.61422 10.12271 11.09986 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.012463 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.829054 B = 2246.184734 C = 3003.324553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.200 3.800 3 H 0.108 0.892 4 C -0.134 4.134 5 H 0.060 0.940 6 C -0.132 4.132 7 C 0.048 3.952 8 N -0.693 5.693 9 C 0.067 3.933 10 N -0.565 5.565 11 C -0.268 4.268 12 H 0.074 0.926 13 C 0.014 3.986 14 N -0.888 5.888 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.286 1.286 19 C 0.220 3.780 20 C 0.203 3.797 21 N -0.488 5.488 22 H 0.073 0.927 23 H 0.021 0.979 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.329 0.671 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.256 0.744 33 H 0.087 0.913 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -4.669 8.913 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.094 3.906 3 H 0.125 0.875 4 C -0.156 4.156 5 H 0.078 0.922 6 C -0.171 4.171 7 C -0.081 4.081 8 N -0.321 5.321 9 C -0.061 4.061 10 N -0.284 5.284 11 C -0.397 4.397 12 H 0.091 0.909 13 C -0.186 4.186 14 N -0.530 5.530 15 Si 0.733 3.267 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.213 1.213 19 C 0.089 3.911 20 C -0.117 4.117 21 N -0.168 5.168 22 H 0.092 0.908 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.455 -4.028 8.038 9.320 hybrid contribution -0.004 0.005 -0.442 0.442 sum 2.451 -4.023 7.596 8.939 Atomic orbital electron populations 1.22146 0.98443 0.98544 1.01444 1.20347 0.91486 0.97411 0.81399 0.87477 1.23329 0.96635 0.99057 0.96538 0.92173 1.22763 0.97801 1.01241 0.95329 1.22585 0.90161 0.99312 0.96065 1.61812 1.38401 1.25841 1.06003 1.22762 0.93978 1.02777 0.86622 1.44222 1.59991 1.04023 1.20183 1.19247 1.13071 0.91234 1.16179 0.90861 1.25128 0.96269 0.98529 0.98717 1.70023 1.23398 1.11240 1.48341 0.86215 0.81146 0.80332 0.79025 1.19935 1.21750 1.21276 1.18891 0.87185 0.90086 0.94913 1.31789 0.95582 0.90969 0.93336 1.80942 1.13473 1.10937 1.11458 0.90794 0.96036 0.94868 0.91833 0.90932 0.93867 0.91549 0.85674 0.90018 0.91682 0.93358 0.89549 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.46 37.15 0.31 -2.74 16 2 C 0.20 4.07 1.29 -67.93 -0.09 3.98 16 3 H 0.11 2.56 5.85 -51.93 -0.30 2.25 16 4 C -0.13 -2.19 2.25 -88.48 -0.20 -2.39 16 5 H 0.06 0.93 6.73 -51.93 -0.35 0.59 16 6 C -0.13 -1.96 5.57 -24.91 -0.14 -2.10 16 7 C 0.05 0.64 7.58 -2.84 -0.02 0.62 16 8 N -0.69 -9.84 7.39 -110.80 -0.82 -10.66 16 9 C 0.07 1.08 6.75 -2.30 -0.02 1.07 16 10 N -0.57 -12.05 2.07 -168.98 -0.35 -12.40 16 11 C -0.27 -6.49 9.57 -15.06 -0.14 -6.64 16 12 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 13 C 0.01 0.36 4.88 -17.43 -0.09 0.28 16 14 N -0.89 -23.63 10.16 55.49 0.56 -23.06 16 15 Si 0.90 20.45 29.59 -169.99 -5.03 15.42 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.22 3.96 5.59 -6.83 -0.04 3.92 16 20 C 0.20 4.26 14.46 -20.76 -0.30 3.96 16 21 N -0.49 -11.30 18.54 42.16 0.78 -10.52 16 22 H 0.07 1.84 7.24 -51.93 -0.38 1.46 16 23 H 0.02 0.42 7.11 -51.93 -0.37 0.05 16 24 H 0.03 0.62 7.50 -51.93 -0.39 0.23 16 25 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.33 3.98 8.91 -39.29 -0.35 3.63 16 30 H 0.08 1.54 8.04 -51.93 -0.42 1.13 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.08 1.23 6.33 -51.93 -0.33 0.90 16 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -27.75 278.00 -6.34 -34.09 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.96 Total: 3.01 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.72 Total: -0.06 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.18 Total: -56.64 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.75 -6.34 -34.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400686980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.135 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds