Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.46885 * 2 1 4 4 C 1.53002 * 109.47542 * 119.99959 * 2 1 3 5 5 H 1.09004 * 110.89934 * 57.58753 * 4 2 1 6 6 C 1.55137 * 110.99437 * 293.72405 * 4 2 1 7 7 C 1.54312 * 103.02085 * 206.25342 * 6 4 2 8 8 N 1.47446 * 107.23301 * 22.27863 * 7 6 4 9 9 C 1.47838 * 108.56735 * 0.99543 * 8 7 6 10 10 N 1.46503 * 109.47329 * 240.00211 * 2 1 3 11 11 C 1.36942 * 119.99832 * 116.46697 * 10 2 1 12 12 H 1.07995 * 119.99532 * 151.00390 * 11 10 2 13 13 C 1.38805 * 120.00168 * 330.99616 * 11 10 2 14 14 N 1.31616 * 120.00505 * 342.67032 * 13 11 10 15 15 Si 1.86808 * 119.99895 * 162.66203 * 13 11 10 16 16 H 1.48497 * 109.46657 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46998 * 120.00432 * 15 13 11 18 18 H 1.48499 * 109.46984 * 240.00682 * 15 13 11 19 19 C 1.46499 * 119.99912 * 296.47052 * 10 2 1 20 20 C 1.47207 * 109.47088 * 93.62026 * 19 10 2 21 21 N 4.17802 * 61.93428 * 229.90662 * 2 1 3 22 22 H 1.09000 * 109.47616 * 59.99680 * 1 2 3 23 23 H 1.09004 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47310 * 299.99327 * 1 2 3 25 25 H 1.09001 * 110.70713 * 87.86516 * 6 4 2 26 26 H 1.09000 * 110.70190 * 324.63529 * 6 4 2 27 27 H 1.09001 * 109.88360 * 262.87540 * 7 6 4 28 28 H 1.08997 * 110.02829 * 141.76563 * 7 6 4 29 29 H 1.00895 * 110.99714 * 238.71847 * 8 7 6 30 30 H 1.08996 * 110.37726 * 94.73040 * 9 8 7 31 31 H 1.09001 * 110.37105 * 217.07594 * 9 8 7 32 32 H 0.97000 * 120.00877 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.47280 * 213.61615 * 19 10 2 34 34 H 1.08995 * 109.47355 * 333.62319 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6551 -1.7400 1.2945 6 6 1.6759 0.0680 2.5343 7 6 2.7713 -0.3660 3.5308 8 7 3.9168 -0.8487 2.7379 9 6 3.5881 -0.7101 1.3032 10 7 2.0183 -0.6906 -1.1962 11 6 2.7449 -0.0057 -2.1334 12 1 3.4783 -0.5245 -2.7328 13 6 2.5386 1.3551 -2.3132 14 7 1.4431 1.9211 -1.8529 15 14 3.8159 2.3832 -3.2082 16 1 4.9470 1.5154 -3.6237 17 1 3.2000 3.0021 -4.4094 18 1 4.3158 3.4492 -2.3032 19 6 1.7293 -2.1137 -1.3897 20 6 0.5073 -2.2608 -2.1971 21 7 -0.4358 -2.3744 -2.8203 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.6891 -0.2199 2.8968 26 1 1.7231 1.1418 2.3533 27 1 2.3968 -1.1676 4.1674 28 1 3.0757 0.4824 4.1437 29 1 4.1377 -1.8061 2.9675 30 1 3.9746 0.2321 0.9147 31 1 3.9936 -1.5494 0.7382 32 1 1.2990 2.8721 -1.9782 33 1 2.5646 -2.5872 -1.9054 34 1 1.5837 -2.5900 -0.4202 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400686980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 28.080030 kcal Electronic energy + Delta-G solvation = -16008.859507 eV Core-core repulsion = 13555.423650 eV Total energy + Delta-G solvation = -2453.435857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95977 -37.88580 -36.54592 -33.66740 -32.46730 -29.86761 -28.90560 -28.50801 -25.26205 -22.81037 -21.92250 -20.59793 -19.07621 -18.12189 -17.42325 -16.62729 -16.03462 -15.68331 -15.22114 -14.67912 -14.37056 -14.19358 -13.82767 -13.52193 -13.38544 -13.24502 -13.04725 -12.87377 -12.72453 -12.53829 -12.22419 -12.08278 -11.83971 -11.65659 -11.42506 -11.40497 -11.09544 -10.46226 -9.22903 -8.74969 -7.86634 -5.35508 1.48455 1.53745 1.60780 2.03490 2.13427 2.57030 3.28302 3.51073 3.66075 3.69993 4.01321 4.17852 4.30142 4.56649 4.62215 4.77626 4.81560 4.89431 4.92916 4.96646 5.02736 5.10509 5.22281 5.28768 5.36820 5.53055 5.71872 5.86011 5.96324 6.09318 6.44039 6.73975 6.95019 7.18912 7.83829 8.28756 9.17377 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.012463 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.829054 B = 2246.184734 C = 3003.324553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.204 3.796 3 H 0.068 0.932 4 C -0.124 4.124 5 H 0.082 0.918 6 C -0.132 4.132 7 C 0.052 3.948 8 N -0.698 5.698 9 C 0.076 3.924 10 N -0.575 5.575 11 C -0.261 4.261 12 H 0.080 0.920 13 C -0.036 4.036 14 N -0.917 5.917 15 Si 0.953 3.047 16 H -0.261 1.261 17 H -0.305 1.305 18 H -0.293 1.293 19 C 0.218 3.782 20 C 0.217 3.783 21 N -0.532 5.532 22 H 0.027 0.973 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.346 0.654 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -6.627 10.401 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.098 3.902 3 H 0.086 0.914 4 C -0.145 4.145 5 H 0.100 0.900 6 C -0.171 4.171 7 C -0.077 4.077 8 N -0.327 5.327 9 C -0.053 4.053 10 N -0.294 5.294 11 C -0.392 4.392 12 H 0.098 0.902 13 C -0.233 4.233 14 N -0.561 5.561 15 Si 0.782 3.218 16 H -0.185 1.185 17 H -0.233 1.233 18 H -0.220 1.220 19 C 0.088 3.912 20 C -0.102 4.102 21 N -0.214 5.214 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.474 -6.017 9.540 11.802 hybrid contribution -0.309 0.576 -0.879 1.095 sum 3.165 -5.441 8.661 10.707 Atomic orbital electron populations 1.21983 0.98975 0.98479 0.99827 1.20181 0.90837 0.96156 0.83017 0.91407 1.23149 0.96868 0.99622 0.94893 0.89993 1.22752 0.99395 0.99776 0.95162 1.22584 0.89153 1.00306 0.95651 1.61690 1.38897 1.27277 1.04795 1.22527 0.93501 1.01339 0.87964 1.44356 1.59770 1.05262 1.20025 1.19548 1.12812 0.91330 1.15468 0.90241 1.25701 0.97544 0.99823 1.00257 1.70176 1.24921 1.10610 1.50390 0.85433 0.79860 0.79127 0.77352 1.18495 1.23309 1.21983 1.19377 0.86767 0.88232 0.96868 1.32397 0.95495 0.89721 0.92558 1.80958 1.15050 1.12242 1.13105 0.95389 0.95053 0.93505 0.90308 0.93146 0.91096 0.91509 0.83813 0.93648 0.90610 0.94414 0.86634 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.46 71.98 0.61 -4.90 16 2 C 0.20 8.17 1.29 44.99 0.06 8.23 16 3 H 0.07 3.31 5.85 -2.38 -0.01 3.30 16 4 C -0.12 -3.74 2.25 -9.41 -0.02 -3.76 16 5 H 0.08 2.16 6.73 -2.38 -0.02 2.14 16 6 C -0.13 -3.62 5.57 31.77 0.18 -3.44 16 7 C 0.05 1.21 7.58 86.64 0.66 1.87 16 8 N -0.70 -17.62 7.39 -504.46 -3.73 -21.35 16 9 C 0.08 2.27 6.75 86.77 0.59 2.85 16 10 N -0.58 -23.69 2.07 -688.52 -1.43 -25.12 16 11 C -0.26 -12.46 9.57 84.03 0.80 -11.66 16 12 H 0.08 3.65 7.89 -2.91 -0.02 3.62 16 13 C -0.04 -1.85 4.88 84.86 0.41 -1.44 16 14 N -0.92 -50.39 10.16 21.65 0.22 -50.17 16 15 Si 0.95 42.65 29.59 68.60 2.03 44.68 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 17 H -0.31 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 C 0.22 7.12 5.59 84.58 0.47 7.60 16 20 C 0.22 8.72 14.46 89.44 1.29 10.01 16 21 N -0.53 -24.26 18.54 20.01 0.37 -23.89 16 22 H 0.03 1.39 7.24 -2.39 -0.02 1.37 16 23 H 0.03 1.18 7.11 -2.38 -0.02 1.17 16 24 H 0.05 1.74 7.50 -2.39 -0.02 1.72 16 25 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 26 H 0.05 1.60 8.01 -2.39 -0.02 1.58 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.35 6.93 8.91 -89.70 -0.80 6.13 16 30 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.25 13.50 8.31 -92.71 -0.77 12.72 16 33 H 0.12 3.20 8.07 -2.39 -0.02 3.18 16 34 H 0.12 3.05 6.33 -2.39 -0.02 3.04 16 Total: -1.00 -61.20 278.00 2.81 -58.39 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.30 Total: 12.09 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.05 Total: 5.37 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.56 Total: -120.53 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -61.20 2.81 -58.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400686980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.469 kcal (2) G-P(sol) polarization free energy of solvation -61.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds