Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.53006 * 109.47015 * 240.00236 * 2 1 3 5 5 H 1.08999 * 110.64709 * 296.85124 * 4 2 1 6 6 C 1.54605 * 110.72388 * 60.00003 * 4 2 1 7 7 C 1.53987 * 105.13728 * 140.48952 * 6 4 2 8 8 N 1.47899 * 107.06317 * 1.22609 * 7 6 4 9 9 C 1.48538 * 105.81859 * 334.66882 * 8 7 6 10 10 N 1.46500 * 109.47261 * 120.00278 * 2 1 3 11 11 C 1.36934 * 120.00024 * 242.01931 * 10 2 1 12 12 H 1.07994 * 119.99827 * 212.85566 * 11 10 2 13 13 C 1.38818 * 119.99614 * 32.85899 * 11 10 2 14 14 N 1.31616 * 120.00297 * 17.18293 * 13 11 10 15 15 Si 1.86797 * 119.99527 * 197.18099 * 13 11 10 16 16 H 1.48503 * 109.46954 * 89.99965 * 15 13 11 17 17 H 1.48499 * 109.47206 * 210.00047 * 15 13 11 18 18 H 1.48495 * 109.47549 * 330.00204 * 15 13 11 19 19 C 1.46507 * 119.99663 * 62.01989 * 10 2 1 20 20 C 1.47196 * 109.46749 * 95.39962 * 19 10 2 21 21 N 4.20097 * 120.61422 * 171.56015 * 2 1 3 22 22 H 1.08994 * 109.47601 * 299.99616 * 1 2 3 23 23 H 1.09007 * 109.47325 * 60.00001 * 1 2 3 24 24 H 1.09005 * 109.46903 * 179.97438 * 1 2 3 25 25 H 1.09004 * 110.30345 * 21.57912 * 6 4 2 26 26 H 1.09002 * 110.39178 * 259.45149 * 6 4 2 27 27 H 1.09004 * 109.91526 * 120.57941 * 7 6 4 28 28 H 1.09001 * 109.92226 * 241.86755 * 7 6 4 29 29 H 1.00902 * 111.00183 * 95.17960 * 8 7 6 30 30 H 1.09001 * 110.66178 * 280.77118 * 9 8 7 31 31 H 1.09002 * 110.66539 * 157.63684 * 9 8 7 32 32 H 0.96999 * 120.00135 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.46556 * 215.39485 * 19 10 2 34 34 H 1.08994 * 109.47134 * 335.40095 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7337 -1.7673 -1.2412 6 6 1.5407 -0.0151 -2.5308 7 6 2.7318 -0.0616 -3.5057 8 7 3.8264 -0.7816 -2.8194 9 6 3.5803 -0.6017 -1.3656 10 7 2.0184 -0.6907 1.1961 11 6 2.7712 -0.0138 2.1182 12 1 3.5435 -0.5303 2.6686 13 6 2.5414 1.3363 2.3454 14 7 1.4140 1.8878 1.9490 15 14 3.8323 2.3701 3.2137 16 1 4.7589 2.9512 2.2092 17 1 3.1668 3.4646 3.9649 18 1 4.5977 1.5163 4.1573 19 6 1.7013 -2.1056 1.4057 20 6 2.8121 -2.9356 0.9118 21 7 3.6694 -3.5763 0.5306 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2706 1.0182 -2.3126 26 1 0.6874 -0.5481 -2.9503 27 1 2.4483 -0.5947 -4.4132 28 1 3.0504 0.9515 -3.7513 29 1 3.8273 -1.7596 -3.0677 30 1 3.9158 0.3822 -1.0376 31 1 4.0715 -1.3878 -0.7922 32 1 1.2534 2.8311 2.1080 33 1 1.5542 -2.2911 2.4697 34 1 0.7901 -2.3579 0.8634 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400686983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = 29.886046 kcal Electronic energy + Delta-G solvation = -16124.850068 eV Core-core repulsion = 13671.492525 eV Total energy + Delta-G solvation = -2453.357542 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11424 -37.87379 -36.66405 -33.70242 -32.44251 -29.91691 -28.84633 -28.51772 -25.22575 -22.88193 -22.34196 -20.34819 -19.24838 -18.01809 -17.32133 -16.90890 -16.08903 -15.77032 -14.98200 -14.83662 -14.58527 -14.35305 -13.92964 -13.65205 -13.40683 -13.12364 -12.94102 -12.81761 -12.70062 -12.61724 -12.21361 -12.06248 -11.99498 -11.64170 -11.53365 -11.45420 -11.05050 -10.44977 -9.55507 -8.68873 -7.88020 -5.38467 1.47494 1.53097 1.57123 1.95816 2.06289 2.55995 3.23701 3.38471 3.59249 3.65608 3.94276 4.09428 4.22099 4.42822 4.63263 4.66237 4.72565 4.89600 4.94489 4.96503 5.04896 5.10909 5.17507 5.24672 5.25954 5.41875 5.70378 5.79698 5.87523 6.04836 6.44793 6.46481 6.85041 7.20340 7.82607 8.30281 9.16422 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.011674 C = 0.010316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.692539 B = 2397.996202 C = 2713.580307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.204 3.796 3 H 0.060 0.940 4 C -0.127 4.127 5 H 0.064 0.936 6 C -0.137 4.137 7 C 0.043 3.957 8 N -0.687 5.687 9 C 0.067 3.933 10 N -0.579 5.579 11 C -0.272 4.272 12 H 0.054 0.946 13 C -0.015 4.015 14 N -0.901 5.901 15 Si 0.944 3.056 16 H -0.294 1.294 17 H -0.291 1.291 18 H -0.276 1.276 19 C 0.220 3.780 20 C 0.220 3.780 21 N -0.510 5.510 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.337 0.663 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.252 0.748 33 H 0.105 0.895 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -3.495 -6.609 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.097 3.903 3 H 0.078 0.922 4 C -0.149 4.149 5 H 0.082 0.918 6 C -0.176 4.176 7 C -0.086 4.086 8 N -0.314 5.314 9 C -0.062 4.062 10 N -0.298 5.298 11 C -0.403 4.403 12 H 0.072 0.928 13 C -0.214 4.214 14 N -0.543 5.543 15 Si 0.773 3.227 16 H -0.221 1.221 17 H -0.218 1.218 18 H -0.201 1.201 19 C 0.089 3.911 20 C -0.100 4.100 21 N -0.191 5.191 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.365 -3.720 -7.223 8.462 hybrid contribution -0.182 0.515 1.020 1.157 sum -2.546 -3.205 -6.203 7.432 Atomic orbital electron populations 1.21986 0.96616 1.00036 1.00954 1.20189 0.92755 0.95197 0.82126 0.92204 1.23171 0.95551 0.99511 0.96639 0.91770 1.22764 0.98963 1.01176 0.94740 1.22777 0.89069 0.99698 0.97099 1.62718 1.46007 1.16868 1.05809 1.22761 0.95177 1.00093 0.88212 1.43962 1.60623 1.04362 1.20859 1.19127 1.10910 0.92870 1.17345 0.92840 1.25505 0.97063 0.99312 0.99529 1.70093 1.22386 1.11814 1.50040 0.85658 0.79718 0.78959 0.78336 1.22109 1.21770 1.20099 1.18758 0.88880 0.82128 1.01315 1.31981 0.95053 0.91731 0.91202 1.81007 1.12527 1.13228 1.12319 0.93233 0.93313 0.93247 0.91869 0.89855 0.89634 0.91373 0.84808 0.93292 0.93090 0.93894 0.87733 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.82 71.98 0.64 -4.27 16 2 C 0.20 8.09 1.18 44.99 0.05 8.14 16 3 H 0.06 2.89 6.07 -2.39 -0.01 2.88 16 4 C -0.13 -4.30 2.05 -9.58 -0.02 -4.32 16 5 H 0.06 2.10 7.03 -2.39 -0.02 2.09 16 6 C -0.14 -3.89 5.49 31.47 0.17 -3.71 16 7 C 0.04 1.16 7.51 86.44 0.65 1.81 16 8 N -0.69 -22.01 7.51 -502.20 -3.77 -25.78 16 9 C 0.07 2.54 6.76 86.65 0.59 3.13 16 10 N -0.58 -24.33 2.17 -688.50 -1.49 -25.82 16 11 C -0.27 -13.35 9.51 84.04 0.80 -12.55 16 12 H 0.05 2.71 7.89 -2.91 -0.02 2.69 16 13 C -0.02 -0.76 4.85 84.86 0.41 -0.35 16 14 N -0.90 -46.50 10.41 21.65 0.23 -46.27 16 15 Si 0.94 42.44 29.59 68.60 2.03 44.47 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 C 0.22 7.43 5.39 84.57 0.46 7.89 16 20 C 0.22 8.02 13.45 89.44 1.20 9.22 16 21 N -0.51 -20.39 18.14 20.01 0.36 -20.03 16 22 H 0.05 2.08 7.20 -2.39 -0.02 2.07 16 23 H 0.05 1.57 7.07 -2.38 -0.02 1.55 16 24 H 0.05 1.50 6.75 -2.38 -0.02 1.49 16 25 H 0.06 1.92 7.53 -2.39 -0.02 1.90 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.34 9.86 8.92 -89.69 -0.80 9.06 16 30 H 0.05 2.14 8.03 -2.39 -0.02 2.12 16 31 H 0.05 2.11 6.63 -2.39 -0.02 2.10 16 32 H 0.25 12.86 8.31 -92.71 -0.77 12.08 16 33 H 0.10 3.32 8.08 -2.39 -0.02 3.30 16 34 H 0.12 3.22 6.53 -2.39 -0.02 3.20 16 Total: -1.00 -55.60 274.60 2.60 -53.00 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.30 Total: 15.45 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 4.95 Total: 4.99 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -4.67 Total: -117.91 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -55.60 2.60 -53.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400686983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.886 kcal (2) G-P(sol) polarization free energy of solvation -55.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds