Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46935 * 2 1 4 4 C 1.52998 * 109.47125 * 119.99886 * 2 1 3 5 5 H 1.09001 * 109.87932 * 55.69764 * 4 2 1 6 6 C 1.54325 * 109.88693 * 294.66942 * 4 2 1 7 7 C 1.55396 * 102.89810 * 218.40827 * 6 4 2 8 8 C 1.54906 * 101.74441 * 35.48039 * 7 6 4 9 9 N 1.47438 * 109.89042 * 176.73320 * 4 2 1 10 10 N 1.46503 * 109.47003 * 239.99745 * 2 1 3 11 11 C 1.36940 * 119.99734 * 121.00219 * 10 2 1 12 12 H 1.08001 * 119.99854 * 143.04685 * 11 10 2 13 13 C 1.38812 * 119.99917 * 323.32488 * 11 10 2 14 14 N 1.31614 * 120.00184 * 342.76695 * 13 11 10 15 15 Si 1.86805 * 119.99461 * 162.76792 * 13 11 10 16 16 H 1.48498 * 109.47026 * 89.99970 * 15 13 11 17 17 H 1.48501 * 109.46717 * 209.99850 * 15 13 11 18 18 H 1.48502 * 109.47171 * 329.99671 * 15 13 11 19 19 C 1.46492 * 120.00112 * 301.00458 * 10 2 1 20 20 C 1.47204 * 109.47267 * 264.25734 * 19 10 2 21 21 N 4.20537 * 118.45147 * 188.65369 * 2 1 3 22 22 H 1.08997 * 109.47222 * 300.00555 * 1 2 3 23 23 H 1.09004 * 109.47260 * 60.00091 * 1 2 3 24 24 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.08998 * 110.70619 * 336.69069 * 6 4 2 26 26 H 1.09004 * 110.70371 * 99.93055 * 6 4 2 27 27 H 1.08997 * 110.87241 * 277.39404 * 7 6 4 28 28 H 1.08993 * 111.02454 * 153.63448 * 7 6 4 29 29 H 1.08993 * 110.37762 * 204.19017 * 8 7 6 30 30 H 1.08998 * 110.37570 * 81.84606 * 8 7 6 31 31 H 1.00900 * 111.00094 * 240.68487 * 9 4 2 32 32 H 0.97002 * 119.99541 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.47325 * 24.25272 * 19 10 2 34 34 H 1.09002 * 109.47587 * 144.25622 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6189 -1.7255 1.2953 6 6 1.6439 0.0725 2.5121 7 6 2.8921 -0.0823 3.4247 8 6 4.0441 -0.0637 2.3892 9 7 3.5122 -0.7954 1.2197 10 7 2.0183 -0.6907 -1.1962 11 6 2.8225 -0.0313 -2.0872 12 1 3.6282 -0.5564 -2.5785 13 6 2.6055 1.3134 -2.3545 14 7 1.4567 1.8708 -2.0355 15 14 3.9443 2.3319 -3.1670 16 1 3.7876 2.2688 -4.6423 17 1 3.8343 3.7429 -2.7174 18 1 5.2751 1.7936 -2.7870 19 6 1.6464 -2.0866 -1.4391 20 6 2.7115 -2.9721 -0.9408 21 7 3.5335 -3.6554 -0.5563 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4718 1.1212 2.2700 26 1 0.7632 -0.3653 2.9819 27 1 2.8653 -1.0303 3.9619 28 1 2.9763 0.7550 4.1174 29 1 4.9214 -0.5727 2.7884 30 1 4.2913 0.9618 2.1149 31 1 3.8261 -1.7544 1.2198 32 1 1.3051 2.8105 -2.2227 33 1 0.7150 -2.3103 -0.9189 34 1 1.5123 -2.2460 -2.5091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400689798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = 49.991234 kcal Electronic energy + Delta-G solvation = -16161.232547 eV Core-core repulsion = 13708.746831 eV Total energy + Delta-G solvation = -2452.485716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.50611 -36.14662 -34.86608 -31.68392 -30.52072 -29.45551 -26.98784 -26.68193 -23.41892 -21.43858 -20.69595 -18.78111 -17.37329 -16.36251 -15.81092 -15.12117 -14.50569 -14.21446 -13.62135 -13.09934 -12.84521 -12.54835 -12.42700 -12.07894 -11.70669 -11.39762 -11.28812 -11.11646 -10.87664 -10.76384 -10.71962 -10.54436 -10.44405 -10.40223 -10.02544 -9.68701 -9.48710 -8.43521 -7.68495 -6.65802 -5.82202 -3.32569 3.39918 3.47580 3.52121 3.66779 3.70104 4.54641 4.76419 5.10640 5.11869 5.16707 5.40942 5.48785 5.60086 5.80166 5.88840 5.98383 6.16128 6.17216 6.26194 6.32775 6.42869 6.51040 6.59341 6.62450 6.77678 6.84613 7.44409 7.59651 7.75519 7.88373 8.08318 8.49671 8.53092 9.20473 9.78580 10.33457 11.25523 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.012237 C = 0.010728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.739109 B = 2287.508117 C = 2609.463491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.204 3.796 3 H 0.097 0.903 4 C 0.060 3.940 5 H 0.039 0.961 6 C -0.131 4.131 7 C -0.156 4.156 8 C 0.049 3.951 9 N -0.656 5.656 10 N -0.553 5.553 11 C -0.250 4.250 12 H 0.058 0.942 13 C 0.022 3.978 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.218 3.782 20 C 0.210 3.790 21 N -0.492 5.492 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.328 0.672 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -2.277 6.948 7.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 H 0.115 0.885 4 C -0.052 4.052 5 H 0.057 0.943 6 C -0.170 4.170 7 C -0.195 4.195 8 C -0.080 4.080 9 N -0.283 5.283 10 N -0.271 5.271 11 C -0.380 4.380 12 H 0.075 0.925 13 C -0.178 4.178 14 N -0.533 5.533 15 Si 0.728 3.272 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.204 1.204 19 C 0.087 3.913 20 C -0.110 4.110 21 N -0.172 5.172 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.253 -2.541 6.986 7.539 hybrid contribution 0.269 0.250 0.324 0.490 sum -0.983 -2.291 7.311 7.724 Atomic orbital electron populations 1.22174 0.98208 0.99006 1.01758 1.20359 0.90615 0.97337 0.81960 0.88488 1.22994 0.87695 0.97855 0.96623 0.94254 1.22852 0.96858 1.01669 0.95621 1.23202 0.96991 1.00988 0.98326 1.22855 0.95826 1.00169 0.89185 1.61490 1.08020 1.17996 1.40837 1.43595 1.57003 1.04894 1.21597 1.18889 1.06960 0.93100 1.19018 0.92465 1.25058 0.95767 0.98586 0.98418 1.70001 1.21089 1.12034 1.50159 0.86387 0.82413 0.79494 0.78914 1.21440 1.21697 1.20396 1.18526 0.88939 0.84180 0.99684 1.31952 0.95082 0.92104 0.91828 1.80937 1.11757 1.12960 1.11548 0.94760 0.90141 0.95389 0.90715 0.91933 0.92396 0.91498 0.92771 0.90869 0.85579 0.93672 0.90006 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.89 37.16 0.33 -2.56 16 2 C 0.20 4.29 1.42 -67.93 -0.10 4.19 16 3 H 0.10 2.42 6.18 -51.93 -0.32 2.10 16 4 C 0.06 1.10 2.25 -66.72 -0.15 0.95 16 5 H 0.04 0.72 7.54 -51.93 -0.39 0.33 16 6 C -0.13 -2.06 5.53 -24.77 -0.14 -2.19 16 7 C -0.16 -2.22 7.08 -24.45 -0.17 -2.40 16 8 C 0.05 0.81 7.58 -2.30 -0.02 0.80 16 9 N -0.66 -12.74 6.54 -103.82 -0.68 -13.42 16 10 N -0.55 -12.34 2.10 -168.97 -0.36 -12.69 16 11 C -0.25 -6.40 9.46 -15.06 -0.14 -6.54 16 12 H 0.06 1.53 7.89 -52.49 -0.41 1.11 16 13 C 0.02 0.57 4.83 -17.43 -0.08 0.48 16 14 N -0.89 -23.53 10.84 55.49 0.60 -22.93 16 15 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.22 4.09 5.50 -6.83 -0.04 4.05 16 20 C 0.21 4.13 13.89 -20.76 -0.29 3.84 16 21 N -0.49 -10.27 18.13 42.15 0.76 -9.51 16 22 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 23 H 0.08 1.75 7.36 -51.93 -0.38 1.36 16 24 H 0.03 0.47 6.63 -51.93 -0.34 0.12 16 25 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.33 6.50 7.83 -39.29 -0.31 6.20 16 32 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.08 1.33 6.39 -51.93 -0.33 1.00 16 34 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 277.04 15.07 4.17 4.17 Total: -1.00 -27.38 277.04 -6.27 -33.65 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.95 Total: 3.92 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.80 Total: 0.61 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.33 Total: -58.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.38 -6.27 -33.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400689798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.637 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds