Wall clock time and date at job start Mon Mar 30 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46935 * 2 1 4 4 C 1.52998 * 109.47125 * 119.99886 * 2 1 3 5 5 H 1.09001 * 109.87932 * 55.69764 * 4 2 1 6 6 C 1.54325 * 109.88693 * 294.66942 * 4 2 1 7 7 C 1.55396 * 102.89810 * 218.40827 * 6 4 2 8 8 C 1.54906 * 101.74441 * 35.48039 * 7 6 4 9 9 N 1.47438 * 109.89042 * 176.73320 * 4 2 1 10 10 N 1.46503 * 109.47003 * 239.99745 * 2 1 3 11 11 C 1.36940 * 119.99734 * 121.00219 * 10 2 1 12 12 H 1.08001 * 119.99854 * 143.04685 * 11 10 2 13 13 C 1.38812 * 119.99917 * 323.32488 * 11 10 2 14 14 N 1.31614 * 120.00184 * 342.76695 * 13 11 10 15 15 Si 1.86805 * 119.99461 * 162.76792 * 13 11 10 16 16 H 1.48498 * 109.47026 * 89.99970 * 15 13 11 17 17 H 1.48501 * 109.46717 * 209.99850 * 15 13 11 18 18 H 1.48502 * 109.47171 * 329.99671 * 15 13 11 19 19 C 1.46492 * 120.00112 * 301.00458 * 10 2 1 20 20 C 1.47204 * 109.47267 * 264.25734 * 19 10 2 21 21 N 4.20537 * 118.45147 * 188.65369 * 2 1 3 22 22 H 1.08997 * 109.47222 * 300.00555 * 1 2 3 23 23 H 1.09004 * 109.47260 * 60.00091 * 1 2 3 24 24 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.08998 * 110.70619 * 336.69069 * 6 4 2 26 26 H 1.09004 * 110.70371 * 99.93055 * 6 4 2 27 27 H 1.08997 * 110.87241 * 277.39404 * 7 6 4 28 28 H 1.08993 * 111.02454 * 153.63448 * 7 6 4 29 29 H 1.08993 * 110.37762 * 204.19017 * 8 7 6 30 30 H 1.08998 * 110.37570 * 81.84606 * 8 7 6 31 31 H 1.00900 * 111.00094 * 240.68487 * 9 4 2 32 32 H 0.97002 * 119.99541 * 180.02562 * 14 13 11 33 33 H 1.09006 * 109.47325 * 24.25272 * 19 10 2 34 34 H 1.09002 * 109.47587 * 144.25622 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6189 -1.7255 1.2953 6 6 1.6439 0.0725 2.5121 7 6 2.8921 -0.0823 3.4247 8 6 4.0441 -0.0637 2.3892 9 7 3.5122 -0.7954 1.2197 10 7 2.0183 -0.6907 -1.1962 11 6 2.8225 -0.0313 -2.0872 12 1 3.6282 -0.5564 -2.5785 13 6 2.6055 1.3134 -2.3545 14 7 1.4567 1.8708 -2.0355 15 14 3.9443 2.3319 -3.1670 16 1 3.7876 2.2688 -4.6423 17 1 3.8343 3.7429 -2.7174 18 1 5.2751 1.7936 -2.7870 19 6 1.6464 -2.0866 -1.4391 20 6 2.7115 -2.9721 -0.9408 21 7 3.5335 -3.6554 -0.5563 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4718 1.1212 2.2700 26 1 0.7632 -0.3653 2.9819 27 1 2.8653 -1.0303 3.9619 28 1 2.9763 0.7550 4.1174 29 1 4.9214 -0.5727 2.7884 30 1 4.2913 0.9618 2.1149 31 1 3.8261 -1.7544 1.2198 32 1 1.3051 2.8105 -2.2227 33 1 0.7150 -2.3103 -0.9189 34 1 1.5123 -2.2460 -2.5091 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400689798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:00 Heat of formation + Delta-G solvation = 33.062455 kcal Electronic energy + Delta-G solvation = -16161.966634 eV Core-core repulsion = 13708.746831 eV Total energy + Delta-G solvation = -2453.219803 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95129 -37.71301 -36.52029 -33.54082 -32.11384 -30.77792 -28.47477 -28.33528 -25.18702 -22.98947 -21.96563 -20.32612 -19.13885 -17.81279 -17.39239 -16.79227 -15.99980 -15.92518 -15.36633 -14.49240 -14.37150 -14.07823 -13.90409 -13.60684 -13.35712 -13.05676 -12.85528 -12.65528 -12.62756 -12.36671 -12.25024 -12.14255 -11.95640 -11.79027 -11.62313 -11.33813 -11.10389 -10.37258 -9.15106 -8.47186 -7.78120 -5.28945 1.48828 1.53284 1.61176 2.04963 2.13495 2.62814 3.34918 3.39525 3.68049 3.78703 3.88210 4.08060 4.21939 4.42520 4.66379 4.69274 4.73062 4.94608 4.96497 4.98653 5.00960 5.10310 5.12863 5.19020 5.31312 5.43886 5.78021 5.86540 5.99322 6.30640 6.55619 6.67182 6.93264 7.31668 7.94548 8.43820 9.25728 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.012237 C = 0.010728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.739109 B = 2287.508117 C = 2609.463491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.207 3.793 3 H 0.053 0.947 4 C 0.065 3.935 5 H 0.046 0.954 6 C -0.128 4.128 7 C -0.142 4.142 8 C 0.045 3.955 9 N -0.682 5.682 10 N -0.565 5.565 11 C -0.251 4.251 12 H 0.041 0.959 13 C -0.016 4.016 14 N -0.904 5.904 15 Si 0.943 3.057 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.288 1.288 19 C 0.219 3.781 20 C 0.222 3.778 21 N -0.513 5.513 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.324 0.676 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -3.036 8.168 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.100 3.900 3 H 0.071 0.929 4 C -0.046 4.046 5 H 0.064 0.936 6 C -0.167 4.167 7 C -0.181 4.181 8 C -0.084 4.084 9 N -0.310 5.310 10 N -0.284 5.284 11 C -0.382 4.382 12 H 0.059 0.941 13 C -0.214 4.214 14 N -0.547 5.547 15 Si 0.773 3.227 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.214 1.214 19 C 0.088 3.912 20 C -0.097 4.097 21 N -0.193 5.193 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.905 -3.309 8.214 9.058 hybrid contribution 0.511 0.455 -0.062 0.688 sum -1.394 -2.854 8.152 8.749 Atomic orbital electron populations 1.22006 0.96639 1.00301 1.01073 1.20266 0.91716 0.95295 0.82739 0.92856 1.22840 0.87263 0.98075 0.96457 0.93589 1.22828 0.98488 1.00615 0.94783 1.23124 0.94733 1.02576 0.97704 1.22882 0.97326 0.99053 0.89177 1.61421 1.08858 1.17851 1.42887 1.43689 1.56904 1.06093 1.21700 1.18889 1.06883 0.93421 1.18984 0.94138 1.25476 0.96970 0.99368 0.99552 1.70088 1.21794 1.11689 1.51153 0.85696 0.80392 0.78239 0.78380 1.21107 1.22044 1.21409 1.18771 0.89683 0.81892 1.00849 1.32003 0.94765 0.91703 0.91202 1.80949 1.12266 1.13734 1.12390 0.93111 0.93166 0.92940 0.91972 0.89571 0.90952 0.89571 0.91392 0.92460 0.86043 0.94208 0.86773 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.89 71.98 0.64 -4.47 16 2 C 0.21 8.49 1.42 44.99 0.06 8.56 16 3 H 0.05 2.68 6.18 -2.39 -0.01 2.67 16 4 C 0.06 2.27 2.25 45.26 0.10 2.37 16 5 H 0.05 1.54 7.54 -2.39 -0.02 1.53 16 6 C -0.13 -3.70 5.53 31.87 0.18 -3.52 16 7 C -0.14 -3.65 7.08 32.07 0.23 -3.42 16 8 C 0.04 1.42 7.58 86.77 0.66 2.07 16 9 N -0.68 -25.81 6.54 -482.36 -3.15 -28.97 16 10 N -0.57 -24.82 2.10 -688.50 -1.45 -26.27 16 11 C -0.25 -12.90 9.46 84.03 0.80 -12.11 16 12 H 0.04 2.19 7.89 -2.91 -0.02 2.17 16 13 C -0.02 -0.81 4.83 84.86 0.41 -0.40 16 14 N -0.90 -48.29 10.84 21.65 0.23 -48.05 16 15 Si 0.94 44.19 29.59 68.60 2.03 46.22 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 19 C 0.22 7.77 5.50 84.58 0.47 8.24 16 20 C 0.22 8.39 13.89 89.44 1.24 9.63 16 21 N -0.51 -20.75 18.13 20.01 0.36 -20.39 16 22 H 0.05 1.64 7.40 -2.39 -0.02 1.62 16 23 H 0.05 2.13 7.36 -2.38 -0.02 2.11 16 24 H 0.05 1.61 6.63 -2.39 -0.02 1.59 16 25 H 0.06 1.95 7.79 -2.39 -0.02 1.94 16 26 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.32 12.47 7.83 -89.69 -0.70 11.77 16 32 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 33 H 0.11 3.33 6.39 -2.38 -0.02 3.32 16 34 H 0.10 3.39 8.09 -2.39 -0.02 3.38 16 Total: -1.00 -58.40 277.04 3.20 -55.21 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.39 Total: 15.31 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 4.78 Total: 6.95 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -4.00 Total: -123.68 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -58.40 3.20 -55.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400689798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.269 kcal (2) G-P(sol) polarization free energy of solvation -58.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds