Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.52994 * 109.47181 * 120.00278 * 2 1 3 5 5 H 1.09004 * 110.33348 * 60.79931 * 4 2 1 6 6 C 1.54913 * 110.37555 * 183.17315 * 4 2 1 7 7 C 1.55135 * 101.65511 * 155.90252 * 6 4 2 8 8 C 1.54322 * 103.01893 * 324.34646 * 7 6 4 9 9 N 1.47446 * 107.23230 * 22.28160 * 8 7 6 10 10 N 1.46499 * 109.47300 * 240.00474 * 2 1 3 11 11 C 1.36936 * 120.00095 * 116.67236 * 10 2 1 12 12 H 1.08006 * 119.99771 * 150.62287 * 11 10 2 13 13 C 1.38803 * 120.00261 * 330.62294 * 11 10 2 14 14 N 1.31624 * 120.00235 * 342.85653 * 13 11 10 15 15 Si 1.86804 * 120.00304 * 162.85511 * 13 11 10 16 16 H 1.48503 * 109.47041 * 59.99809 * 15 13 11 17 17 H 1.48496 * 109.47413 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46923 * 300.00532 * 15 13 11 19 19 C 1.46505 * 119.99754 * 296.67803 * 10 2 1 20 20 C 1.47203 * 109.47225 * 93.40378 * 19 10 2 21 21 N 4.17517 * 61.79941 * 230.00087 * 2 1 3 22 22 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46661 * 299.99806 * 1 2 3 24 24 H 1.08996 * 109.47218 * 59.99496 * 1 2 3 25 25 H 1.09008 * 110.98557 * 273.99319 * 6 4 2 26 26 H 1.08998 * 110.98890 * 37.80726 * 6 4 2 27 27 H 1.09002 * 110.70591 * 205.96125 * 7 6 4 28 28 H 1.09000 * 110.71092 * 82.73047 * 7 6 4 29 29 H 1.09001 * 109.88636 * 262.88123 * 8 7 6 30 30 H 1.08989 * 110.02448 * 141.77027 * 8 7 6 31 31 H 1.00897 * 110.99181 * 123.25782 * 9 8 7 32 32 H 0.96997 * 120.00296 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.46760 * 213.40321 * 19 10 2 34 34 H 1.09001 * 109.46793 * 333.40660 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6961 -1.7556 1.2562 6 6 3.5868 -0.6643 1.3112 7 6 3.8462 -0.8385 2.8307 8 6 2.6645 -0.0826 3.4740 9 7 1.5871 -0.0200 2.4694 10 7 2.0183 -0.6905 -1.1962 11 6 2.7485 -0.0067 -2.1314 12 1 3.4858 -0.5258 -2.7259 13 6 2.5410 1.3533 -2.3152 14 7 1.4440 1.9195 -1.8584 15 14 3.8186 2.3804 -3.2109 16 1 3.9986 1.8556 -4.5884 17 1 3.3630 3.7924 -3.2743 18 1 5.1103 2.3098 -2.4817 19 6 1.7254 -2.1126 -1.3920 20 6 0.5015 -2.2551 -2.1972 21 7 -0.4431 -2.3651 -2.8188 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 4.0307 -1.4818 0.7430 26 1 3.9563 0.2991 0.9599 27 1 4.7951 -0.3834 3.1144 28 1 3.8254 -1.8927 3.1069 29 1 2.9747 0.9257 3.7483 30 1 2.3167 -0.6167 4.3581 31 1 0.7361 -0.4280 2.8262 32 1 1.2989 2.8698 -1.9872 33 1 2.5587 -2.5871 -1.9103 34 1 1.5806 -2.5904 -0.4230 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400689802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = 49.337136 kcal Electronic energy + Delta-G solvation = -16015.661551 eV Core-core repulsion = 13563.147471 eV Total energy + Delta-G solvation = -2452.514080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.49640 -36.27061 -34.76033 -31.70095 -30.56072 -29.51935 -27.17715 -26.74146 -23.46086 -21.41408 -20.48122 -18.95644 -17.41685 -16.47659 -16.12703 -15.05354 -14.46272 -14.19267 -13.63558 -13.05944 -12.75380 -12.57558 -12.03425 -11.96066 -11.87379 -11.64790 -11.38516 -11.23253 -11.04738 -10.80447 -10.80194 -10.54097 -10.33483 -10.16036 -9.92066 -9.65644 -9.56040 -8.52607 -7.94345 -6.87896 -5.89301 -3.39900 3.35139 3.40983 3.42112 3.75096 3.82055 4.43548 4.65182 5.08518 5.13808 5.23454 5.40153 5.43613 5.58615 5.75516 5.85905 5.94915 6.15036 6.17134 6.26760 6.34627 6.45726 6.58697 6.69694 6.84908 6.89870 7.02013 7.34201 7.65200 7.68449 7.82019 7.92770 8.35903 8.64465 9.09946 9.67830 10.18729 11.16224 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.012591 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.386648 B = 2223.242011 C = 2991.708318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.204 3.796 3 H 0.112 0.888 4 C 0.060 3.940 5 H 0.035 0.965 6 C -0.105 4.105 7 C -0.148 4.148 8 C 0.050 3.950 9 N -0.675 5.675 10 N -0.564 5.564 11 C -0.273 4.273 12 H 0.071 0.929 13 C 0.017 3.983 14 N -0.883 5.883 15 Si 0.904 3.096 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.219 3.781 20 C 0.204 3.796 21 N -0.489 5.489 22 H 0.015 0.985 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.331 0.669 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -4.905 9.454 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.097 3.903 3 H 0.130 0.870 4 C -0.050 4.050 5 H 0.053 0.947 6 C -0.143 4.143 7 C -0.187 4.187 8 C -0.080 4.080 9 N -0.305 5.305 10 N -0.284 5.284 11 C -0.402 4.402 12 H 0.089 0.911 13 C -0.185 4.185 14 N -0.524 5.524 15 Si 0.733 3.267 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.207 1.207 19 C 0.088 3.912 20 C -0.116 4.116 21 N -0.169 5.169 22 H 0.034 0.966 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.387 -4.192 8.308 9.903 hybrid contribution 0.694 -0.249 0.011 0.738 sum 4.082 -4.442 8.319 10.276 Atomic orbital electron populations 1.22082 0.98451 0.98041 1.01679 1.20290 0.91553 0.97714 0.80720 0.87043 1.23114 0.94659 0.95206 0.92060 0.94690 1.22527 0.95470 1.03050 0.93280 1.22854 0.98547 0.99562 0.97725 1.22540 0.91914 0.99729 0.93810 1.61697 1.05108 1.58805 1.04853 1.44172 1.59914 1.04196 1.20107 1.19117 1.13056 0.91348 1.16673 0.91086 1.25140 0.96187 0.98537 0.98604 1.70016 1.23180 1.11405 1.47791 0.86368 0.81319 0.79345 0.79676 1.20836 1.21615 1.20672 1.18911 0.87146 0.90245 0.94878 1.31786 0.95581 0.90929 0.93299 1.80935 1.13482 1.10993 1.11477 0.96619 0.94143 0.91085 0.91115 0.90394 0.91553 0.92349 0.91437 0.94147 0.85387 0.93231 0.89610 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.47 37.15 0.31 -2.79 16 2 C 0.20 4.32 1.52 -67.94 -0.10 4.21 16 3 H 0.11 2.81 5.89 -51.93 -0.31 2.50 16 4 C 0.06 1.03 2.58 -66.19 -0.17 0.86 16 5 H 0.04 0.57 6.56 -51.93 -0.34 0.23 16 6 C -0.11 -1.69 6.23 -24.59 -0.15 -1.85 16 7 C -0.15 -1.94 6.94 -24.91 -0.17 -2.11 16 8 C 0.05 0.66 7.58 -2.83 -0.02 0.64 16 9 N -0.68 -10.66 6.40 -103.84 -0.67 -11.33 16 10 N -0.56 -12.34 2.09 -168.97 -0.35 -12.70 16 11 C -0.27 -6.72 9.57 -15.06 -0.14 -6.86 16 12 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 13 C 0.02 0.43 4.88 -17.43 -0.09 0.35 16 14 N -0.88 -24.03 10.18 55.49 0.56 -23.46 16 15 Si 0.90 20.65 29.59 -169.99 -5.03 15.62 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 C 0.22 4.03 5.59 -6.82 -0.04 3.99 16 20 C 0.20 4.34 14.44 -20.76 -0.30 4.04 16 21 N -0.49 -11.46 18.54 42.15 0.78 -10.67 16 22 H 0.01 0.31 7.10 -51.93 -0.37 -0.06 16 23 H 0.04 0.81 7.69 -51.93 -0.40 0.41 16 24 H 0.07 1.82 7.24 -51.93 -0.38 1.44 16 25 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 26 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.33 4.72 8.91 -39.29 -0.35 4.37 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.08 1.25 6.26 -51.93 -0.33 0.93 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -28.32 278.61 -6.34 -34.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.97 Total: 3.20 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.87 Total: 0.48 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.33 Total: -58.16 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.32 -6.34 -34.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400689802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.000 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds