Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.52994 * 109.47181 * 120.00278 * 2 1 3 5 5 H 1.09004 * 110.33348 * 60.79931 * 4 2 1 6 6 C 1.54913 * 110.37555 * 183.17315 * 4 2 1 7 7 C 1.55135 * 101.65511 * 155.90252 * 6 4 2 8 8 C 1.54322 * 103.01893 * 324.34646 * 7 6 4 9 9 N 1.47446 * 107.23230 * 22.28160 * 8 7 6 10 10 N 1.46499 * 109.47300 * 240.00474 * 2 1 3 11 11 C 1.36936 * 120.00095 * 116.67236 * 10 2 1 12 12 H 1.08006 * 119.99771 * 150.62287 * 11 10 2 13 13 C 1.38803 * 120.00261 * 330.62294 * 11 10 2 14 14 N 1.31624 * 120.00235 * 342.85653 * 13 11 10 15 15 Si 1.86804 * 120.00304 * 162.85511 * 13 11 10 16 16 H 1.48503 * 109.47041 * 59.99809 * 15 13 11 17 17 H 1.48496 * 109.47413 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46923 * 300.00532 * 15 13 11 19 19 C 1.46505 * 119.99754 * 296.67803 * 10 2 1 20 20 C 1.47203 * 109.47225 * 93.40378 * 19 10 2 21 21 N 4.17517 * 61.79941 * 230.00087 * 2 1 3 22 22 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46661 * 299.99806 * 1 2 3 24 24 H 1.08996 * 109.47218 * 59.99496 * 1 2 3 25 25 H 1.09008 * 110.98557 * 273.99319 * 6 4 2 26 26 H 1.08998 * 110.98890 * 37.80726 * 6 4 2 27 27 H 1.09002 * 110.70591 * 205.96125 * 7 6 4 28 28 H 1.09000 * 110.71092 * 82.73047 * 7 6 4 29 29 H 1.09001 * 109.88636 * 262.88123 * 8 7 6 30 30 H 1.08989 * 110.02448 * 141.77027 * 8 7 6 31 31 H 1.00897 * 110.99181 * 123.25782 * 9 8 7 32 32 H 0.96997 * 120.00296 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.46760 * 213.40321 * 19 10 2 34 34 H 1.09001 * 109.46793 * 333.40660 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6961 -1.7556 1.2562 6 6 3.5868 -0.6643 1.3112 7 6 3.8462 -0.8385 2.8307 8 6 2.6645 -0.0826 3.4740 9 7 1.5871 -0.0200 2.4694 10 7 2.0183 -0.6905 -1.1962 11 6 2.7485 -0.0067 -2.1314 12 1 3.4858 -0.5258 -2.7259 13 6 2.5410 1.3533 -2.3152 14 7 1.4440 1.9195 -1.8584 15 14 3.8186 2.3804 -3.2109 16 1 3.9986 1.8556 -4.5884 17 1 3.3630 3.7924 -3.2743 18 1 5.1103 2.3098 -2.4817 19 6 1.7254 -2.1126 -1.3920 20 6 0.5015 -2.2551 -2.1972 21 7 -0.4431 -2.3651 -2.8188 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 4.0307 -1.4818 0.7430 26 1 3.9563 0.2991 0.9599 27 1 4.7951 -0.3834 3.1144 28 1 3.8254 -1.8927 3.1069 29 1 2.9747 0.9257 3.7483 30 1 2.3167 -0.6167 4.3581 31 1 0.7361 -0.4280 2.8262 32 1 1.2989 2.8698 -1.9872 33 1 2.5587 -2.5871 -1.9103 34 1 1.5806 -2.5904 -0.4230 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400689802.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = 31.151251 kcal Electronic energy + Delta-G solvation = -16016.450150 eV Core-core repulsion = 13563.147471 eV Total energy + Delta-G solvation = -2453.302679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86975 -37.83754 -36.49099 -33.54083 -32.11060 -30.76524 -28.54740 -28.47976 -25.23963 -22.92144 -21.60659 -20.49107 -19.14153 -18.07588 -17.43113 -16.64555 -16.09608 -15.73632 -15.27750 -14.44126 -14.28517 -14.09555 -13.69347 -13.54696 -13.42193 -13.14311 -13.02136 -12.83499 -12.63714 -12.55525 -12.27064 -12.03974 -11.86378 -11.63275 -11.50933 -11.26124 -11.14070 -10.40832 -9.19009 -8.66363 -7.82445 -5.33594 1.52027 1.53688 1.58933 2.04636 2.14567 2.58475 3.26350 3.41694 3.71392 3.97583 3.98708 4.11880 4.35550 4.45326 4.66582 4.78005 4.82169 4.88340 4.95015 5.03037 5.12882 5.15646 5.21672 5.33511 5.41117 5.59439 5.73358 5.83283 6.05245 6.25919 6.47721 6.73408 6.96302 7.22245 7.87147 8.31947 9.20188 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.019820 B = 0.012591 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.386648 B = 2223.242011 C = 2991.708318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.208 3.792 3 H 0.068 0.932 4 C 0.070 3.930 5 H 0.055 0.945 6 C -0.105 4.105 7 C -0.137 4.137 8 C 0.049 3.951 9 N -0.695 5.695 10 N -0.574 5.574 11 C -0.267 4.267 12 H 0.080 0.920 13 C -0.035 4.035 14 N -0.914 5.914 15 Si 0.956 3.044 16 H -0.281 1.281 17 H -0.304 1.304 18 H -0.272 1.272 19 C 0.217 3.783 20 C 0.217 3.783 21 N -0.532 5.532 22 H 0.026 0.974 23 H 0.048 0.952 24 H 0.023 0.977 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.341 0.659 32 H 0.246 0.754 33 H 0.117 0.883 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -6.796 10.968 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.102 3.898 3 H 0.086 0.914 4 C -0.040 4.040 5 H 0.073 0.927 6 C -0.144 4.144 7 C -0.176 4.176 8 C -0.080 4.080 9 N -0.325 5.325 10 N -0.294 5.294 11 C -0.397 4.397 12 H 0.097 0.903 13 C -0.233 4.233 14 N -0.557 5.557 15 Si 0.785 3.215 16 H -0.207 1.207 17 H -0.231 1.231 18 H -0.198 1.198 19 C 0.087 3.913 20 C -0.101 4.101 21 N -0.213 5.213 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.711 -6.107 9.836 12.499 hybrid contribution 0.277 0.309 -0.440 0.605 sum 4.988 -5.798 9.395 12.115 Atomic orbital electron populations 1.21898 0.99135 0.97959 0.99724 1.20107 0.90777 0.96307 0.82658 0.91401 1.22816 0.95249 0.95367 0.90590 0.92664 1.22452 0.94583 1.01506 0.95836 1.22812 0.98834 1.00997 0.94920 1.22583 0.91387 0.99947 0.94083 1.61534 1.06438 1.59305 1.05263 1.44289 1.59692 1.05444 1.19967 1.19458 1.12832 0.91477 1.15960 0.90279 1.25756 0.97534 0.99873 1.00141 1.70192 1.24859 1.10655 1.50003 0.85540 0.79849 0.77368 0.78783 1.20736 1.23072 1.19766 1.19397 0.86769 0.88347 0.96833 1.32390 0.95509 0.89708 0.92537 1.80949 1.15020 1.12263 1.13104 0.95505 0.93308 0.95756 0.90263 0.93813 0.90532 0.90086 0.92205 0.91406 0.84308 0.94458 0.86580 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.47 71.98 0.61 -4.93 16 2 C 0.21 8.71 1.52 44.99 0.07 8.78 16 3 H 0.07 3.51 5.89 -2.38 -0.01 3.49 16 4 C 0.07 2.24 2.58 45.39 0.12 2.35 16 5 H 0.06 1.55 6.56 -2.38 -0.02 1.54 16 6 C -0.11 -3.15 6.23 31.98 0.20 -2.95 16 7 C -0.14 -3.08 6.94 31.77 0.22 -2.86 16 8 C 0.05 1.16 7.58 86.65 0.66 1.82 16 9 N -0.69 -20.40 6.40 -482.45 -3.09 -23.49 16 10 N -0.57 -24.38 2.09 -688.51 -1.44 -25.82 16 11 C -0.27 -12.98 9.57 84.03 0.80 -12.18 16 12 H 0.08 3.67 7.89 -2.91 -0.02 3.64 16 13 C -0.04 -1.85 4.88 84.86 0.41 -1.44 16 14 N -0.91 -51.50 10.18 21.65 0.22 -51.28 16 15 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 C 0.22 7.31 5.59 84.57 0.47 7.78 16 20 C 0.22 8.91 14.44 89.44 1.29 10.20 16 21 N -0.53 -24.63 18.54 20.01 0.37 -24.26 16 22 H 0.03 1.05 7.10 -2.39 -0.02 1.03 16 23 H 0.05 1.96 7.69 -2.38 -0.02 1.94 16 24 H 0.02 1.25 7.24 -2.39 -0.02 1.23 16 25 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.34 8.77 8.91 -89.70 -0.80 7.97 16 32 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.12 3.30 8.07 -2.39 -0.02 3.28 16 34 H 0.12 3.14 6.26 -2.39 -0.01 3.13 16 Total: -1.00 -62.86 278.61 3.24 -59.62 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.30 Total: 13.56 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.85 Total: 6.56 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -3.94 Total: -124.85 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.86 3.24 -59.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400689802.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.773 kcal (2) G-P(sol) polarization free energy of solvation -62.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds