Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46965 * 2 1 4 4 C 1.53000 * 109.47386 * 240.00583 * 2 1 3 5 5 H 1.09002 * 110.45646 * 302.41196 * 4 2 1 6 6 C 1.54372 * 110.41459 * 179.97438 * 4 2 1 7 7 C 1.54265 * 105.06050 * 217.36566 * 6 4 2 8 8 C 1.54381 * 105.06058 * 0.02562 * 7 6 4 9 9 N 1.48562 * 110.41109 * 64.81826 * 4 2 1 10 10 N 1.46502 * 109.47317 * 120.00161 * 2 1 3 11 11 C 1.36934 * 119.99865 * 240.01293 * 10 2 1 12 12 H 1.07998 * 119.99953 * 212.97235 * 11 10 2 13 13 C 1.38809 * 119.99957 * 32.98403 * 11 10 2 14 14 N 1.31619 * 120.00300 * 18.34363 * 13 11 10 15 15 Si 1.86810 * 119.99903 * 198.35147 * 13 11 10 16 16 H 1.48495 * 109.46948 * 89.99620 * 15 13 11 17 17 H 1.48499 * 109.47163 * 209.99607 * 15 13 11 18 18 H 1.48500 * 109.46941 * 329.99609 * 15 13 11 19 19 C 1.46501 * 119.99919 * 60.01727 * 10 2 1 20 20 C 1.47203 * 109.46949 * 95.63780 * 19 10 2 21 21 N 4.20404 * 119.18300 * 171.42154 * 2 1 3 22 22 H 1.08992 * 109.47060 * 59.99636 * 1 2 3 23 23 H 1.09003 * 109.46517 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47121 * 299.99424 * 1 2 3 25 25 H 1.08996 * 110.32282 * 336.25854 * 6 4 2 26 26 H 1.08998 * 110.32839 * 98.36745 * 6 4 2 27 27 H 1.09004 * 110.32703 * 118.89323 * 7 6 4 28 28 H 1.08995 * 110.32538 * 240.99641 * 7 6 4 29 29 H 1.08997 * 110.41479 * 142.62989 * 8 7 6 30 30 H 1.09003 * 110.40864 * 265.07198 * 8 7 6 31 31 H 1.00891 * 111.00477 * 277.82449 * 9 4 2 32 32 H 0.97001 * 119.99832 * 179.97438 * 14 13 11 33 33 H 1.08990 * 109.47102 * 215.63670 * 19 10 2 34 34 H 1.08996 * 109.46995 * 335.63964 * 19 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6510 -1.7386 -1.2874 6 6 3.5836 -0.7332 -1.2716 7 6 3.9646 -0.5454 -2.7546 8 6 2.6191 -0.4349 -3.5035 9 7 1.6543 0.0272 -2.4733 10 7 2.0184 -0.6906 1.1962 11 6 2.8054 -0.0251 2.0976 12 1 3.5731 -0.5567 2.6401 13 6 2.6164 1.3329 2.3143 14 7 1.4883 1.9063 1.9525 15 14 3.9632 2.3467 3.1194 16 1 4.8647 2.8920 2.0729 17 1 3.3524 3.4668 3.8794 18 1 4.7431 1.4871 4.0457 19 6 1.6648 -2.0934 1.4277 20 6 2.7457 -2.9603 0.9309 21 7 3.5799 -3.6293 0.5475 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.9773 0.0880 -0.6727 26 1 3.9602 -1.6863 -0.9002 27 1 4.5452 0.3680 -2.8836 28 1 4.5296 -1.4061 -3.1122 29 1 2.6920 0.2939 -4.3107 30 1 2.3206 -1.4077 -3.8943 31 1 0.7062 -0.1867 -2.7442 32 1 1.3561 2.8552 2.1043 33 1 1.5260 -2.2615 2.4956 34 1 0.7402 -2.3269 0.9000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400689810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = 33.009449 kcal Electronic energy + Delta-G solvation = -16140.898241 eV Core-core repulsion = 13687.676139 eV Total energy + Delta-G solvation = -2453.222101 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00214 -37.79854 -36.62920 -33.58955 -32.12385 -30.97670 -28.60154 -28.50084 -25.21312 -23.06569 -21.62432 -20.61197 -19.24240 -17.91596 -17.51826 -16.84437 -16.11474 -15.92751 -15.31874 -14.60223 -14.35069 -14.09388 -13.68991 -13.62829 -13.44469 -13.13968 -13.10179 -12.96187 -12.73395 -12.62979 -12.23756 -12.11913 -12.04432 -11.63723 -11.50706 -11.35586 -11.11472 -10.42768 -9.43271 -8.67860 -7.86286 -5.37201 1.48089 1.53316 1.57719 1.94633 2.05497 2.56737 3.20933 3.36525 3.59665 3.82350 3.95460 4.00214 4.19761 4.31373 4.59967 4.66368 4.73017 4.82301 4.92085 4.97646 5.04951 5.07226 5.19084 5.20142 5.30350 5.42291 5.70141 5.75298 6.02731 6.08150 6.48344 6.58027 6.84195 7.21434 7.84120 8.31627 9.17924 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.011780 C = 0.010515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.515044 B = 2376.324244 C = 2662.346571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.204 3.796 3 H 0.065 0.935 4 C 0.064 3.936 5 H 0.036 0.964 6 C -0.108 4.108 7 C -0.126 4.126 8 C 0.042 3.958 9 N -0.666 5.666 10 N -0.576 5.576 11 C -0.275 4.275 12 H 0.054 0.946 13 C -0.014 4.014 14 N -0.897 5.897 15 Si 0.944 3.056 16 H -0.294 1.294 17 H -0.291 1.291 18 H -0.275 1.275 19 C 0.218 3.782 20 C 0.220 3.780 21 N -0.512 5.512 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.342 0.658 32 H 0.252 0.748 33 H 0.107 0.893 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -3.937 -6.995 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.098 3.902 3 H 0.083 0.917 4 C -0.048 4.048 5 H 0.054 0.946 6 C -0.147 4.147 7 C -0.164 4.164 8 C -0.087 4.087 9 N -0.297 5.297 10 N -0.296 5.296 11 C -0.405 4.405 12 H 0.072 0.928 13 C -0.214 4.214 14 N -0.539 5.539 15 Si 0.773 3.227 16 H -0.221 1.221 17 H -0.217 1.217 18 H -0.200 1.200 19 C 0.087 3.913 20 C -0.099 4.099 21 N -0.192 5.192 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.365 -4.061 -7.358 8.515 hybrid contribution 0.352 0.096 0.562 0.670 sum -1.012 -3.965 -6.797 7.933 Atomic orbital electron populations 1.21948 0.96614 0.99884 1.01062 1.20111 0.92664 0.95688 0.81738 0.91736 1.22966 0.94524 0.94751 0.92527 0.94650 1.22097 0.96028 1.00222 0.96328 1.22338 0.97822 1.01682 0.94557 1.22884 0.91781 0.99188 0.94861 1.63577 1.06654 1.56456 1.02999 1.43909 1.58567 1.05748 1.21365 1.19086 1.10380 0.92237 1.18759 0.92839 1.25522 0.97216 0.99161 0.99456 1.70111 1.22762 1.10850 1.50220 0.85663 0.80052 0.78880 0.78098 1.22123 1.21733 1.19998 1.18800 0.89392 0.81761 1.01317 1.31997 0.94854 0.91848 0.91173 1.80977 1.12476 1.13449 1.12305 0.93071 0.93235 0.93344 0.93992 0.93440 0.91611 0.91147 0.89046 0.93499 0.84142 0.93897 0.87545 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.91 71.98 0.64 -4.38 16 2 C 0.20 8.47 1.41 44.99 0.06 8.53 16 3 H 0.06 3.29 6.05 -2.38 -0.01 3.28 16 4 C 0.06 2.28 2.08 45.06 0.09 2.38 16 5 H 0.04 1.23 7.43 -2.39 -0.02 1.21 16 6 C -0.11 -4.18 5.91 31.49 0.19 -3.99 16 7 C -0.13 -3.90 7.00 31.49 0.22 -3.68 16 8 C 0.04 1.13 7.47 86.46 0.65 1.78 16 9 N -0.67 -20.93 6.92 -479.09 -3.32 -24.25 16 10 N -0.58 -24.82 1.98 -688.51 -1.36 -26.18 16 11 C -0.27 -13.67 9.50 84.03 0.80 -12.87 16 12 H 0.05 2.74 7.89 -2.91 -0.02 2.72 16 13 C -0.01 -0.72 4.82 84.86 0.41 -0.31 16 14 N -0.90 -47.44 10.67 21.65 0.23 -47.21 16 15 Si 0.94 42.92 29.59 68.60 2.03 44.95 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.22 7.53 5.47 84.57 0.46 7.99 16 20 C 0.22 8.21 13.39 89.44 1.20 9.40 16 21 N -0.51 -20.73 17.76 20.01 0.36 -20.38 16 22 H 0.05 1.73 7.45 -2.39 -0.02 1.71 16 23 H 0.05 1.53 6.67 -2.39 -0.02 1.51 16 24 H 0.05 2.07 7.41 -2.39 -0.02 2.05 16 25 H 0.04 1.89 7.86 -2.39 -0.02 1.88 16 26 H 0.05 1.93 6.12 -2.39 -0.01 1.92 16 27 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.34 9.18 8.42 -89.70 -0.76 8.43 16 32 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.11 3.43 8.08 -2.39 -0.02 3.41 16 34 H 0.12 3.30 6.44 -2.39 -0.02 3.28 16 Total: -1.00 -57.24 274.90 3.00 -54.24 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.34 Total: 13.98 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.72 Total: 4.84 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -4.09 Total: -118.02 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -57.24 3.00 -54.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400689810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -57.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds