Wall clock time and date at job start Mon Mar 30 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47619 * 240.00363 * 3 2 1 5 5 H 1.48509 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47161 * 119.99999 * 3 2 1 7 7 C 1.37878 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00639 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99676 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00095 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47114 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46811 * 65.00188 * 13 12 11 15 15 C 1.52999 * 117.49908 * 248.74389 * 14 13 12 16 16 C 1.53004 * 117.49690 * 180.08574 * 14 13 12 17 17 C 1.52999 * 109.47054 * 185.00114 * 13 12 11 18 18 C 1.52997 * 117.49491 * 128.75147 * 17 13 12 19 19 C 1.52995 * 117.49915 * 60.09079 * 17 13 12 20 20 H 0.97000 * 120.00068 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47673 * 59.99889 * 9 7 2 22 22 H 1.09001 * 109.46626 * 299.99463 * 9 7 2 23 23 H 1.00899 * 110.99247 * 303.94930 * 10 9 7 24 24 H 1.09001 * 109.47267 * 59.99263 * 11 10 9 25 25 H 1.09004 * 109.47041 * 299.99667 * 11 10 9 26 26 H 1.09001 * 109.46832 * 59.99999 * 12 11 10 27 27 H 1.08993 * 109.47194 * 299.99521 * 12 11 10 28 28 H 1.08997 * 109.47395 * 305.00572 * 13 12 11 29 29 H 1.08996 * 115.54978 * 34.41403 * 14 13 12 30 30 H 1.09003 * 117.49885 * 0.02562 * 15 14 13 31 31 H 1.09007 * 117.50135 * 145.01957 * 15 14 13 32 32 H 1.08999 * 117.49668 * 214.97861 * 16 14 13 33 33 H 1.08996 * 117.50112 * 359.97438 * 16 14 13 34 34 H 1.09003 * 115.54932 * 274.41730 * 17 13 12 35 35 H 1.08996 * 117.50607 * 359.97438 * 18 17 13 36 36 H 1.09007 * 117.49656 * 145.02083 * 18 17 13 37 37 H 1.09004 * 117.49877 * 214.97846 * 19 17 13 38 38 H 1.09001 * 117.49958 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0020 12 6 2.5302 -6.0430 -0.0023 13 6 1.8008 -7.3880 -0.0022 14 6 1.0215 -7.5456 -1.3094 15 6 -0.5061 -7.5127 -1.2295 16 6 0.2182 -8.8335 -1.5021 17 6 2.8210 -8.5214 0.1231 18 6 2.5813 -9.5703 1.2109 19 6 3.7038 -8.5421 1.3725 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8919 22 1 0.6241 -2.5574 0.8881 23 1 2.8410 -3.5483 -0.7824 24 1 0.8807 -4.9813 -0.8922 25 1 0.8801 -4.9816 0.8878 26 1 3.1551 -5.9688 0.8877 27 1 3.1551 -5.9683 -0.8923 28 1 1.1096 -7.4265 0.8397 29 1 1.4889 -7.1072 -2.1911 30 1 -0.9558 -7.3784 -0.2457 31 1 -1.0437 -7.0531 -2.0589 32 1 0.1568 -9.2421 -2.5107 33 1 0.2453 -9.5686 -0.6978 34 1 3.2654 -8.8595 -0.8130 35 1 1.6973 -9.4528 1.8375 36 1 2.8686 -10.5985 0.9906 37 1 4.7291 -8.8943 1.2585 38 1 3.5582 -7.7481 2.1049 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400797557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:16 Heat of formation + Delta-G solvation = 9.558879 kcal Electronic energy + Delta-G solvation = -15026.600447 eV Core-core repulsion = 12675.901796 eV Total energy + Delta-G solvation = -2350.698651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98662 -37.22304 -36.96635 -34.80049 -32.65145 -29.08374 -26.54065 -23.78773 -23.34543 -23.14980 -22.47405 -22.07994 -20.53936 -18.54607 -16.94707 -16.70228 -16.49521 -16.05307 -15.74064 -14.93562 -14.74829 -14.66605 -13.99444 -13.65824 -13.24994 -12.89316 -12.72481 -12.57124 -12.54710 -12.35825 -12.34116 -12.13549 -11.84298 -11.64486 -11.34986 -11.17826 -11.06090 -10.67296 -10.63353 -10.59306 -9.11364 -8.23106 -6.35179 1.40981 1.45200 1.53227 2.39995 2.92426 2.97750 3.09835 3.53826 3.68120 3.92173 4.06880 4.13713 4.19008 4.25532 4.29469 4.40577 4.52288 4.61987 4.76257 4.82363 4.85683 4.92047 4.99046 5.04856 5.08530 5.12310 5.22113 5.25700 5.27673 5.30513 5.33867 5.44697 5.56432 5.61444 6.01329 6.44917 6.72584 6.88914 7.36086 8.88543 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.004854 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.772054 B = 5766.592184 C = 6276.265629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.692 5.692 11 C 0.065 3.935 12 C -0.093 4.093 13 C -0.017 4.017 14 C -0.149 4.149 15 C -0.194 4.194 16 C -0.158 4.158 17 C -0.141 4.141 18 C -0.173 4.173 19 C -0.186 4.186 20 H 0.266 0.734 21 H -0.041 1.041 22 H -0.004 1.004 23 H 0.334 0.666 24 H 0.018 0.982 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -19.062 -1.421 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.130 4.130 13 C -0.036 4.036 14 C -0.167 4.167 15 C -0.231 4.231 16 C -0.195 4.195 17 C -0.159 4.159 18 C -0.210 4.210 19 C -0.223 4.223 20 H 0.074 0.926 21 H -0.024 1.024 22 H 0.014 0.986 23 H 0.151 0.849 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.108 -18.944 -0.728 19.398 hybrid contribution -0.475 1.092 -0.849 1.462 sum 3.634 -17.852 -1.577 18.286 Atomic orbital electron populations 1.70091 1.07916 1.28136 1.51393 1.26000 0.95813 1.03534 0.94429 0.85341 0.78080 0.77360 0.79237 1.18952 1.20686 1.19257 1.21539 0.93860 0.91425 1.50887 0.91636 1.19188 0.90678 0.89159 0.92922 1.60552 1.20564 1.01859 1.49233 1.21920 0.96193 0.89474 0.98894 1.21460 0.97080 0.92059 1.02442 1.20217 0.95060 0.92704 0.95586 1.22262 0.92878 1.02753 0.98834 1.23038 0.94780 1.02571 1.02732 1.22957 1.02786 0.90497 1.03265 1.22167 1.00849 0.98687 0.94229 1.23068 1.00299 0.95704 1.01920 1.23007 0.96568 1.02267 1.00433 0.92564 1.02379 0.98590 0.84870 0.96420 0.93503 0.91505 0.91740 0.91964 0.88479 0.89466 0.89350 0.88043 0.88055 0.87306 0.89204 0.87625 0.87952 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -31.73 9.32 25.60 0.24 -31.49 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.72 5.44 85.56 0.47 12.19 16 10 N -0.69 -31.35 6.49 -517.93 -3.36 -34.71 16 11 C 0.06 2.41 5.50 86.30 0.48 2.88 16 12 C -0.09 -2.63 4.84 30.60 0.15 -2.49 16 13 C -0.02 -0.39 2.16 -10.79 -0.02 -0.41 16 14 C -0.15 -3.38 4.12 -10.79 -0.04 -3.42 16 15 C -0.19 -4.47 10.18 30.62 0.31 -4.16 16 16 C -0.16 -2.95 9.88 30.62 0.30 -2.65 16 17 C -0.14 -2.71 4.81 -10.80 -0.05 -2.76 16 18 C -0.17 -2.88 10.18 30.62 0.31 -2.57 16 19 C -0.19 -3.46 9.68 30.62 0.30 -3.16 16 20 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 22 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.33 14.26 8.72 -89.69 -0.78 13.47 16 24 H 0.02 0.67 7.38 -2.39 -0.02 0.65 16 25 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.07 1.95 7.13 -2.39 -0.02 1.94 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 29 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 30 H 0.09 2.08 8.05 -2.39 -0.02 2.06 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 35 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 36 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.09 1.79 7.59 -2.39 -0.02 1.77 16 Total: -1.00 -64.24 312.40 2.06 -62.18 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.22 Total: 20.68 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 2.89 Total: -37.57 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -3.08 Total: -92.24 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.24 2.06 -62.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400797557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.736 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds