Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46695 * 239.99862 * 3 2 1 5 5 H 1.48508 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47327 * 119.99817 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99428 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99846 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.61567 * 55.35860 * 13 12 11 15 15 C 1.53300 * 109.61479 * 295.00015 * 13 12 11 16 16 C 1.52880 * 108.57964 * 165.64806 * 15 13 12 17 17 C 1.52709 * 110.04095 * 54.58743 * 16 15 13 18 18 H 1.09007 * 115.38833 * 128.71703 * 17 16 15 19 19 C 1.53805 * 115.93850 * 269.59830 * 17 16 15 20 20 C 1.51880 * 120.64634 * 338.33040 * 17 16 15 21 21 H 1.09007 * 115.30025 * 149.11383 * 20 17 16 22 22 C 1.52070 * 119.96998 * 5.52231 * 20 17 16 23 23 H 0.97002 * 120.00237 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46708 * 60.00521 * 9 7 2 25 25 H 1.08999 * 109.47087 * 300.00560 * 9 7 2 26 26 H 1.08997 * 109.47124 * 60.00583 * 10 9 7 27 27 H 1.08999 * 109.47501 * 300.00113 * 10 9 7 28 28 H 1.00898 * 110.99832 * 303.95253 * 11 10 9 29 29 H 1.09000 * 109.46748 * 59.99798 * 12 11 10 30 30 H 1.08999 * 109.47250 * 300.00064 * 12 11 10 31 31 H 1.08991 * 109.62126 * 45.91852 * 15 13 12 32 32 H 1.09007 * 109.62143 * 285.37238 * 15 13 12 33 33 H 1.09002 * 109.35867 * 174.73082 * 16 15 13 34 34 H 1.08994 * 109.35832 * 294.45107 * 16 15 13 35 35 H 1.08997 * 117.55690 * 4.54988 * 19 17 16 36 36 H 1.09008 * 117.58511 * 219.18660 * 19 17 16 37 37 H 1.09008 * 109.27075 * 217.92007 * 22 20 17 38 38 H 1.08999 * 109.27269 * 98.45599 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0036 13 6 1.6351 -7.3800 0.0048 14 1 0.9460 -7.3873 -0.8396 15 6 0.8464 -7.4987 1.3140 16 6 -0.2038 -8.5979 1.1520 17 6 0.4635 -9.8980 0.7088 18 1 0.2161 -10.7769 1.3042 19 6 0.5744 -10.1135 -0.8100 20 6 1.8224 -9.8787 0.0308 21 1 2.4462 -10.7540 0.2123 22 6 2.5878 -8.5711 -0.0998 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.8718 -3.6035 0.8927 27 1 2.8720 -3.6051 -0.8872 28 1 0.8741 -4.9838 0.7844 29 1 3.0632 -6.0345 0.8936 30 1 3.0632 -6.0352 -0.8864 31 1 0.3537 -6.5511 1.5316 32 1 1.5242 -7.7572 2.1276 33 1 -0.7094 -8.7576 2.1044 34 1 -0.9336 -8.2926 0.4023 35 1 0.2447 -9.3028 -1.4598 36 1 0.4053 -11.1209 -1.1906 37 1 3.0922 -8.5444 -1.0658 38 1 3.3309 -8.5082 0.6951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403220203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = -7.577829 kcal Electronic energy + Delta-G solvation = -15088.660772 eV Core-core repulsion = 12737.219018 eV Total energy + Delta-G solvation = -2351.441754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77625 -36.24890 -33.64704 -32.29657 -31.08819 -29.10302 -25.77196 -24.03938 -23.42310 -21.49950 -20.71346 -20.36036 -18.50110 -16.29000 -16.20618 -15.31631 -14.57742 -14.44333 -14.31283 -13.92552 -13.36667 -13.15605 -12.73238 -12.34059 -12.23007 -12.08771 -11.70947 -11.31423 -11.08994 -10.90705 -10.74029 -10.59639 -10.52311 -10.27044 -9.94531 -9.79962 -9.67635 -9.30687 -9.12859 -8.32773 -7.75166 -5.97421 -4.00035 3.35000 3.39147 3.41654 3.64310 4.44433 4.53101 4.60096 4.69548 4.84636 4.95158 5.14209 5.25155 5.31345 5.38351 5.47132 5.58691 5.60968 5.69099 5.79092 5.83946 5.93693 6.03649 6.05605 6.10602 6.19525 6.27887 6.37115 6.38860 6.44713 6.56803 7.01775 7.53419 7.76246 7.86634 8.01320 8.12004 8.46458 9.07085 9.63545 11.14033 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067041 B = 0.004254 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.554509 B = 6580.846084 C = 6794.039047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.692 5.692 12 C 0.064 3.936 13 C -0.087 4.087 14 H 0.079 0.921 15 C -0.116 4.116 16 C -0.088 4.088 17 C -0.149 4.149 18 H 0.096 0.904 19 C -0.186 4.186 20 C -0.136 4.136 21 H 0.094 0.906 22 C -0.083 4.083 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.057 0.943 28 H 0.335 0.665 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -19.243 1.492 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.066 4.066 13 C -0.105 4.105 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.125 4.125 17 C -0.167 4.167 18 H 0.115 0.885 19 C -0.223 4.223 20 C -0.154 4.154 21 H 0.112 0.888 22 C -0.121 4.121 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.992 -19.122 0.805 19.242 hybrid contribution 0.800 0.870 0.908 1.490 sum 2.792 -18.252 1.713 18.544 Atomic orbital electron populations 1.69964 1.06034 1.26679 1.50618 1.25000 0.94841 0.99189 0.95304 0.86647 0.79565 0.83118 0.78588 1.20221 1.21260 1.20299 1.21153 0.92952 0.91072 1.50945 0.92830 1.19064 0.94036 0.90460 0.97664 1.22150 0.96964 0.88619 0.98542 1.60623 1.19871 1.02128 1.49784 1.21920 0.94447 0.90343 0.99896 1.21228 0.97335 0.93442 0.98536 0.90243 1.21644 0.97740 0.98572 0.97420 1.21029 0.97488 0.92810 1.01199 1.22247 1.00066 0.99407 0.94999 0.88534 1.23174 1.02779 1.02389 0.93959 1.21766 0.90417 0.99194 1.04051 0.88793 1.20857 0.97417 0.91913 1.01890 0.92947 0.95658 0.96883 0.96789 0.92443 0.84671 0.96037 0.91536 0.91291 0.92149 0.91837 0.91426 0.88464 0.89363 0.91530 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 N -0.69 -12.70 6.50 -113.77 -0.74 -13.44 16 12 C 0.06 0.95 5.17 -3.82 -0.02 0.93 16 13 C -0.09 -1.07 2.15 -90.53 -0.19 -1.27 16 14 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 15 C -0.12 -1.37 5.23 -26.64 -0.14 -1.51 16 16 C -0.09 -0.92 5.84 -26.94 -0.16 -1.08 16 17 C -0.15 -1.46 6.18 -90.92 -0.56 -2.02 16 18 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 19 C -0.19 -1.79 9.67 -26.67 -0.26 -2.05 16 20 C -0.14 -1.33 5.99 -92.02 -0.55 -1.88 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.08 -0.88 5.23 -27.27 -0.14 -1.02 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.33 5.93 6.78 -39.29 -0.27 5.66 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 32 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.10 1.01 7.26 -51.93 -0.38 0.63 16 36 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -29.87 298.74 -9.91 -39.78 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.79 Total: 0.61 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.60 Total: -21.80 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.00 Total: -39.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.87 -9.91 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403220203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.204 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds