Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46695 * 239.99862 * 3 2 1 5 5 H 1.48508 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47327 * 119.99817 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99428 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00298 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99846 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46991 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.61567 * 55.35860 * 13 12 11 15 15 C 1.53300 * 109.61479 * 295.00015 * 13 12 11 16 16 C 1.52880 * 108.57964 * 165.64806 * 15 13 12 17 17 C 1.52709 * 110.04095 * 54.58743 * 16 15 13 18 18 H 1.09007 * 115.38833 * 128.71703 * 17 16 15 19 19 C 1.53805 * 115.93850 * 269.59830 * 17 16 15 20 20 C 1.51880 * 120.64634 * 338.33040 * 17 16 15 21 21 H 1.09007 * 115.30025 * 149.11383 * 20 17 16 22 22 C 1.52070 * 119.96998 * 5.52231 * 20 17 16 23 23 H 0.97002 * 120.00237 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46708 * 60.00521 * 9 7 2 25 25 H 1.08999 * 109.47087 * 300.00560 * 9 7 2 26 26 H 1.08997 * 109.47124 * 60.00583 * 10 9 7 27 27 H 1.08999 * 109.47501 * 300.00113 * 10 9 7 28 28 H 1.00898 * 110.99832 * 303.95253 * 11 10 9 29 29 H 1.09000 * 109.46748 * 59.99798 * 12 11 10 30 30 H 1.08999 * 109.47250 * 300.00064 * 12 11 10 31 31 H 1.08991 * 109.62126 * 45.91852 * 15 13 12 32 32 H 1.09007 * 109.62143 * 285.37238 * 15 13 12 33 33 H 1.09002 * 109.35867 * 174.73082 * 16 15 13 34 34 H 1.08994 * 109.35832 * 294.45107 * 16 15 13 35 35 H 1.08997 * 117.55690 * 4.54988 * 19 17 16 36 36 H 1.09008 * 117.58511 * 219.18660 * 19 17 16 37 37 H 1.09008 * 109.27075 * 217.92007 * 22 20 17 38 38 H 1.08999 * 109.27269 * 98.45599 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0036 13 6 1.6351 -7.3800 0.0048 14 1 0.9460 -7.3873 -0.8396 15 6 0.8464 -7.4987 1.3140 16 6 -0.2038 -8.5979 1.1520 17 6 0.4635 -9.8980 0.7088 18 1 0.2161 -10.7769 1.3042 19 6 0.5744 -10.1135 -0.8100 20 6 1.8224 -9.8787 0.0308 21 1 2.4462 -10.7540 0.2123 22 6 2.5878 -8.5711 -0.0998 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.8718 -3.6035 0.8927 27 1 2.8720 -3.6051 -0.8872 28 1 0.8741 -4.9838 0.7844 29 1 3.0632 -6.0345 0.8936 30 1 3.0632 -6.0352 -0.8864 31 1 0.3537 -6.5511 1.5316 32 1 1.5242 -7.7572 2.1276 33 1 -0.7094 -8.7576 2.1044 34 1 -0.9336 -8.2926 0.4023 35 1 0.2447 -9.3028 -1.4598 36 1 0.4053 -11.1209 -1.1906 37 1 3.0922 -8.5444 -1.0658 38 1 3.3309 -8.5082 0.6951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403220203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = -24.666029 kcal Electronic energy + Delta-G solvation = -15089.401772 eV Core-core repulsion = 12737.219018 eV Total energy + Delta-G solvation = -2352.182754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65304 -37.67040 -35.40631 -33.90538 -32.03667 -30.86718 -27.27087 -25.34978 -24.77719 -22.52340 -22.31095 -21.52639 -19.37919 -18.49961 -17.20948 -16.65832 -16.45766 -15.65189 -15.41629 -15.00727 -14.82684 -14.45992 -14.03867 -13.84759 -13.61216 -13.14763 -13.08998 -12.82176 -12.58662 -12.50730 -12.20783 -11.99658 -11.63737 -11.53982 -11.51571 -11.34707 -10.98873 -10.58770 -10.56428 -10.48764 -9.27155 -8.20563 -6.32635 1.40277 1.43893 1.51869 2.40594 2.87996 3.12629 3.33456 3.72721 3.81869 3.89948 4.06245 4.19713 4.32280 4.38258 4.51459 4.56068 4.61209 4.62855 4.73641 4.79762 4.83214 4.99095 5.04738 5.06419 5.07784 5.18666 5.25318 5.34724 5.39537 5.43595 5.47902 5.55599 5.66240 5.78266 6.14151 6.28866 6.55146 6.84319 7.36756 8.91526 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067041 B = 0.004254 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.554509 B = 6580.846084 C = 6794.039047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.699 5.699 12 C 0.065 3.935 13 C -0.079 4.079 14 H 0.066 0.934 15 C -0.115 4.115 16 C -0.087 4.087 17 C -0.151 4.151 18 H 0.111 0.889 19 C -0.188 4.188 20 C -0.137 4.137 21 H 0.110 0.890 22 C -0.080 4.080 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.010 1.010 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.337 0.663 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -20.036 1.816 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.331 5.331 12 C -0.064 4.064 13 C -0.098 4.098 14 H 0.084 0.916 15 C -0.153 4.153 16 C -0.125 4.125 17 C -0.170 4.170 18 H 0.129 0.871 19 C -0.225 4.225 20 C -0.155 4.155 21 H 0.128 0.872 22 C -0.118 4.118 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.303 -19.940 1.129 20.243 hybrid contribution 0.349 1.083 0.801 1.391 sum 3.652 -18.857 1.930 19.304 Atomic orbital electron populations 1.70104 1.07873 1.27924 1.51278 1.25994 0.95781 1.03431 0.94507 0.85455 0.78236 0.77835 0.79226 1.19135 1.20710 1.19069 1.21595 0.93557 0.92272 1.51198 0.92123 1.18922 0.94316 0.92380 0.94982 1.21778 0.95601 0.88560 0.98643 1.60543 1.20484 1.01892 1.50191 1.21996 0.94221 0.90001 1.00173 1.21128 0.97266 0.92990 0.98387 0.91598 1.21623 0.98071 0.98420 0.97188 1.21010 0.97035 0.92884 1.01551 1.22297 1.00064 0.99314 0.95279 0.87092 1.23200 1.02744 1.02772 0.93758 1.21814 0.90521 0.99163 1.03987 0.87173 1.20826 0.97135 0.91419 1.02407 0.92691 0.98809 0.99115 0.96400 0.92472 0.84368 0.95331 0.91496 0.92796 0.91512 0.90812 0.92336 0.89715 0.87932 0.91188 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.73 5.23 29.85 0.16 1.89 16 10 C 0.08 3.64 5.62 86.30 0.49 4.12 16 11 N -0.70 -25.82 6.50 -513.87 -3.34 -29.16 16 12 C 0.07 1.88 5.17 86.30 0.45 2.33 16 13 C -0.08 -1.89 2.15 -10.74 -0.02 -1.91 16 14 H 0.07 1.77 7.11 -2.39 -0.02 1.75 16 15 C -0.12 -2.62 5.23 30.65 0.16 -2.46 16 16 C -0.09 -1.74 5.84 30.46 0.18 -1.56 16 17 C -0.15 -2.65 6.18 -10.99 -0.07 -2.72 16 18 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 19 C -0.19 -3.29 9.67 30.63 0.30 -2.99 16 20 C -0.14 -2.36 5.99 -11.70 -0.07 -2.43 16 21 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 22 C -0.08 -1.55 5.23 30.25 0.16 -1.39 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.34 12.18 6.78 -89.70 -0.61 11.57 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.38 6.21 -2.39 -0.01 1.36 16 32 H 0.07 1.43 8.04 -2.38 -0.02 1.41 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.08 1.70 7.26 -2.39 -0.02 1.68 16 36 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -63.71 298.74 1.78 -61.92 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.40 Total: 16.33 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.41 Total: -38.36 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.06 Total: -86.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.71 1.78 -61.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403220203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -63.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds