Wall clock time and date at job start Mon Mar 30 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47157 * 299.99783 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99860 * 3 2 1 7 7 C 1.37876 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47214 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.47358 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00054 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47120 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.61319 * 54.63634 * 13 12 11 15 15 C 1.53232 * 109.78048 * 294.17284 * 13 12 11 16 16 C 1.52872 * 108.62849 * 165.72367 * 15 13 12 17 17 C 1.52077 * 110.48674 * 54.90245 * 16 15 13 18 18 H 1.08998 * 114.63586 * 193.17274 * 17 16 15 19 19 C 1.52301 * 119.83867 * 49.56533 * 17 16 15 20 20 C 1.52067 * 120.01694 * 338.31244 * 17 16 15 21 21 H 1.08998 * 117.25543 * 216.66570 * 20 17 16 22 22 C 1.52713 * 120.52683 * 5.29479 * 20 17 16 23 23 H 0.96998 * 120.00110 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46755 * 59.99966 * 9 7 2 25 25 H 1.09000 * 109.46694 * 300.00077 * 9 7 2 26 26 H 1.09003 * 109.47112 * 59.99547 * 10 9 7 27 27 H 1.08999 * 109.47054 * 300.00124 * 10 9 7 28 28 H 1.00900 * 111.00267 * 56.04518 * 11 10 9 29 29 H 1.08999 * 109.47005 * 60.00138 * 12 11 10 30 30 H 1.09001 * 109.47026 * 299.99883 * 12 11 10 31 31 H 1.08998 * 109.57083 * 45.99015 * 15 13 12 32 32 H 1.09003 * 109.61609 * 285.47902 * 15 13 12 33 33 H 1.09002 * 109.26936 * 294.64958 * 16 15 13 34 34 H 1.08996 * 109.26712 * 175.14758 * 16 15 13 35 35 H 1.09000 * 117.54262 * 357.56121 * 19 17 16 36 36 H 1.09001 * 117.53429 * 142.80921 * 19 17 16 37 37 H 1.08993 * 109.35445 * 98.73304 * 22 20 17 38 38 H 1.08993 * 109.35656 * 218.45456 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4353 -6.0759 0.0018 13 6 1.6352 -7.3801 0.0031 14 1 0.9371 -7.3819 -0.8341 15 6 0.8611 -7.5123 1.3189 16 6 -0.1885 -8.6122 1.1596 17 6 0.4642 -9.9092 0.7073 18 1 -0.2328 -10.6703 0.3564 19 6 1.6891 -10.4376 1.4421 20 6 1.8186 -9.8788 0.0166 21 1 1.9857 -10.5966 -0.7865 22 6 2.5895 -8.5678 -0.1218 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8740 -4.9846 -0.7800 29 1 3.0632 -6.0344 0.8918 30 1 3.0633 -6.0353 -0.8882 31 1 0.3691 -6.5674 1.5495 32 1 1.5484 -7.7759 2.1228 33 1 -0.9247 -8.3023 0.4179 34 1 -0.6871 -8.7747 2.1151 35 1 2.0866 -9.8341 2.2581 36 1 1.7734 -11.5168 1.5698 37 1 3.3447 -8.5084 0.6618 38 1 3.0767 -8.5363 -1.0962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403220228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:40 Heat of formation + Delta-G solvation = -8.854624 kcal Electronic energy + Delta-G solvation = -15058.894485 eV Core-core repulsion = 12707.397364 eV Total energy + Delta-G solvation = -2351.497120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70856 -36.21964 -33.65211 -32.31380 -30.99876 -29.09652 -25.67939 -24.21565 -23.25647 -21.30853 -20.83806 -20.37819 -18.41062 -16.32808 -16.26760 -15.25056 -14.56771 -14.24576 -14.08937 -13.91077 -13.83185 -12.98059 -12.60923 -12.31774 -12.16688 -12.01703 -11.74984 -11.24637 -11.04797 -10.93169 -10.72544 -10.64241 -10.51241 -10.20225 -9.95475 -9.79572 -9.63352 -9.31107 -9.09835 -8.33583 -7.74202 -5.98019 -4.00384 3.32351 3.39602 3.43817 3.64740 4.44274 4.52226 4.66263 4.76766 4.83606 5.06628 5.10008 5.26353 5.37942 5.39096 5.48016 5.65840 5.66899 5.72032 5.83029 5.88155 5.92079 5.98905 6.06778 6.19870 6.27248 6.30926 6.38542 6.47833 6.55437 6.61805 7.01771 7.53425 7.76550 7.86503 8.01021 8.11778 8.46377 9.07253 9.63361 11.13495 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.070539 B = 0.004199 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.848475 B = 6666.952589 C = 6895.509547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.063 3.937 13 C -0.082 4.082 14 H 0.069 0.931 15 C -0.111 4.111 16 C -0.090 4.090 17 C -0.138 4.138 18 H 0.093 0.907 19 C -0.186 4.186 20 C -0.146 4.146 21 H 0.097 0.903 22 C -0.084 4.084 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.013 0.987 28 H 0.335 0.665 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -19.218 0.624 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.320 5.320 12 C -0.067 4.067 13 C -0.101 4.101 14 H 0.088 0.912 15 C -0.149 4.149 16 C -0.127 4.127 17 C -0.156 4.156 18 H 0.111 0.889 19 C -0.223 4.223 20 C -0.164 4.164 21 H 0.115 0.885 22 C -0.122 4.122 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.254 -19.103 1.316 19.281 hybrid contribution 0.805 0.853 -0.963 1.518 sum 3.059 -18.250 0.353 18.508 Atomic orbital electron populations 1.69984 1.06026 1.26445 1.50825 1.25006 0.94841 0.99215 0.95339 0.86537 0.80082 0.83805 0.77572 1.19780 1.21038 1.20974 1.21231 0.93022 0.91065 1.50642 0.92742 1.19073 0.94043 0.90475 0.97680 1.22141 0.96941 0.88632 0.98510 1.60555 1.19801 1.02070 1.49597 1.21953 0.94513 0.90426 0.99827 1.21154 0.97077 0.93188 0.98677 0.91241 1.21577 0.97471 0.99209 0.96606 1.20882 0.98045 0.92812 1.00961 1.21849 0.90769 0.99432 1.03535 0.88921 1.23125 1.03370 1.00270 0.95575 1.22183 0.99722 0.99118 0.95416 0.88482 1.21073 0.97224 0.92167 1.01760 0.93068 0.96847 0.95655 0.92487 0.96824 0.84824 0.91616 0.96101 0.89595 0.92626 0.91495 0.91841 0.88697 0.89435 0.91683 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.42 5.62 -3.83 -0.02 1.40 16 11 N -0.69 -12.39 5.83 -113.78 -0.66 -13.06 16 12 C 0.06 0.92 5.09 -3.82 -0.02 0.90 16 13 C -0.08 -1.02 2.30 -90.56 -0.21 -1.22 16 14 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 15 C -0.11 -1.38 5.02 -26.68 -0.13 -1.51 16 16 C -0.09 -0.97 5.93 -27.27 -0.16 -1.13 16 17 C -0.14 -1.37 6.00 -91.92 -0.55 -1.93 16 18 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.19 -1.76 9.66 -26.75 -0.26 -2.02 16 20 C -0.15 -1.45 6.19 -90.90 -0.56 -2.01 16 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.08 -0.90 5.12 -26.94 -0.14 -1.04 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.33 5.85 8.73 -39.29 -0.34 5.51 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 1.25 7.49 -51.93 -0.39 0.86 16 32 H 0.06 0.68 7.11 -51.93 -0.37 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.93 7.26 -51.93 -0.38 0.55 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -29.63 301.16 -9.95 -39.58 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.93 Total: 0.38 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.61 Total: -21.82 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.07 Total: -39.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.63 -9.95 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403220228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.722 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds