Wall clock time and date at job start Mon Mar 30 2020 03:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47157 * 299.99783 * 3 2 1 6 6 H 1.48501 * 109.47273 * 59.99860 * 3 2 1 7 7 C 1.37876 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47214 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.47358 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00054 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47120 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.61319 * 54.63634 * 13 12 11 15 15 C 1.53232 * 109.78048 * 294.17284 * 13 12 11 16 16 C 1.52872 * 108.62849 * 165.72367 * 15 13 12 17 17 C 1.52077 * 110.48674 * 54.90245 * 16 15 13 18 18 H 1.08998 * 114.63586 * 193.17274 * 17 16 15 19 19 C 1.52301 * 119.83867 * 49.56533 * 17 16 15 20 20 C 1.52067 * 120.01694 * 338.31244 * 17 16 15 21 21 H 1.08998 * 117.25543 * 216.66570 * 20 17 16 22 22 C 1.52713 * 120.52683 * 5.29479 * 20 17 16 23 23 H 0.96998 * 120.00110 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46755 * 59.99966 * 9 7 2 25 25 H 1.09000 * 109.46694 * 300.00077 * 9 7 2 26 26 H 1.09003 * 109.47112 * 59.99547 * 10 9 7 27 27 H 1.08999 * 109.47054 * 300.00124 * 10 9 7 28 28 H 1.00900 * 111.00267 * 56.04518 * 11 10 9 29 29 H 1.08999 * 109.47005 * 60.00138 * 12 11 10 30 30 H 1.09001 * 109.47026 * 299.99883 * 12 11 10 31 31 H 1.08998 * 109.57083 * 45.99015 * 15 13 12 32 32 H 1.09003 * 109.61609 * 285.47902 * 15 13 12 33 33 H 1.09002 * 109.26936 * 294.64958 * 16 15 13 34 34 H 1.08996 * 109.26712 * 175.14758 * 16 15 13 35 35 H 1.09000 * 117.54262 * 357.56121 * 19 17 16 36 36 H 1.09001 * 117.53429 * 142.80921 * 19 17 16 37 37 H 1.08993 * 109.35445 * 98.73304 * 22 20 17 38 38 H 1.08993 * 109.35656 * 218.45456 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4353 -6.0759 0.0018 13 6 1.6352 -7.3801 0.0031 14 1 0.9371 -7.3819 -0.8341 15 6 0.8611 -7.5123 1.3189 16 6 -0.1885 -8.6122 1.1596 17 6 0.4642 -9.9092 0.7073 18 1 -0.2328 -10.6703 0.3564 19 6 1.6891 -10.4376 1.4421 20 6 1.8186 -9.8788 0.0166 21 1 1.9857 -10.5966 -0.7865 22 6 2.5895 -8.5678 -0.1218 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8740 -4.9846 -0.7800 29 1 3.0632 -6.0344 0.8918 30 1 3.0633 -6.0353 -0.8882 31 1 0.3691 -6.5674 1.5495 32 1 1.5484 -7.7759 2.1228 33 1 -0.9247 -8.3023 0.4179 34 1 -0.6871 -8.7747 2.1151 35 1 2.0866 -9.8341 2.2581 36 1 1.7734 -11.5168 1.5698 37 1 3.3447 -8.5084 0.6618 38 1 3.0767 -8.5363 -1.0962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403220228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:40 Heat of formation + Delta-G solvation = -25.518452 kcal Electronic energy + Delta-G solvation = -15059.617082 eV Core-core repulsion = 12707.397364 eV Total energy + Delta-G solvation = -2352.219718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58972 -37.64652 -35.39806 -33.92717 -31.97349 -30.85739 -27.19951 -25.40879 -24.73289 -22.56073 -21.96098 -21.76855 -19.32156 -18.50023 -17.15314 -16.71311 -16.45248 -15.55145 -15.40751 -15.05186 -14.73253 -14.40261 -14.22557 -13.70692 -13.57423 -13.11040 -12.92028 -12.87579 -12.70398 -12.42668 -12.09935 -12.03911 -11.65962 -11.59559 -11.44026 -11.32093 -10.98851 -10.57574 -10.57424 -10.45707 -9.23687 -8.20743 -6.32391 1.40270 1.40903 1.54284 2.40450 2.87574 3.12655 3.37507 3.69719 3.91262 3.93538 4.14346 4.14648 4.34092 4.40303 4.51882 4.57214 4.59528 4.75505 4.76891 4.85303 4.89644 4.92064 4.99652 5.06577 5.07281 5.26840 5.32904 5.41162 5.41626 5.44197 5.56249 5.57724 5.67584 5.79143 6.14942 6.29657 6.56426 6.85150 7.37033 8.91688 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.070539 B = 0.004199 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.848475 B = 6666.952589 C = 6895.509547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.694 5.694 12 C 0.065 3.935 13 C -0.075 4.075 14 H 0.066 0.934 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.144 4.144 18 H 0.105 0.895 19 C -0.181 4.181 20 C -0.150 4.150 21 H 0.110 0.890 22 C -0.081 4.081 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.006 1.006 26 H 0.055 0.945 27 H 0.017 0.983 28 H 0.337 0.663 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -20.056 0.412 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.064 4.064 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.162 4.162 18 H 0.123 0.877 19 C -0.218 4.218 20 C -0.168 4.168 21 H 0.128 0.872 22 C -0.119 4.119 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.013 0.987 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.155 0.845 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.454 -19.965 1.104 20.292 hybrid contribution 0.394 1.082 -0.883 1.451 sum 3.847 -18.883 0.221 19.272 Atomic orbital electron populations 1.70115 1.07836 1.27766 1.51464 1.25988 0.95785 1.03414 0.94584 0.85356 0.79006 0.78555 0.77849 1.18588 1.20236 1.20298 1.21654 0.93529 0.92314 1.50885 0.92213 1.18925 0.94312 0.92324 0.95039 1.21761 0.95565 0.88623 0.98534 1.60467 1.20316 1.01719 1.49940 1.22015 0.94278 0.90102 1.00014 1.21077 0.97116 0.92714 0.98459 0.91541 1.21506 0.97797 0.98609 0.96705 1.20841 0.97554 0.92874 1.01248 1.21869 0.91156 0.99114 1.04027 0.87725 1.23173 1.02512 1.01087 0.95033 1.22230 0.99461 0.98890 0.96224 0.87173 1.21036 0.96860 0.91690 1.02301 0.92716 0.99038 0.98742 0.92614 0.96498 0.84538 0.91748 0.95408 0.92198 0.92492 0.91801 0.91388 0.89256 0.87929 0.91552 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.72 5.23 29.85 0.16 1.87 16 10 C 0.08 3.65 5.62 86.30 0.49 4.13 16 11 N -0.69 -25.08 5.83 -513.89 -2.99 -28.08 16 12 C 0.06 1.86 5.09 86.30 0.44 2.30 16 13 C -0.07 -1.78 2.30 -10.76 -0.02 -1.80 16 14 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 15 C -0.11 -2.65 5.02 30.63 0.15 -2.50 16 16 C -0.09 -1.82 5.93 30.25 0.18 -1.64 16 17 C -0.14 -2.57 6.00 -11.64 -0.07 -2.64 16 18 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.18 -2.99 9.66 30.58 0.30 -2.70 16 20 C -0.15 -2.62 6.19 -10.98 -0.07 -2.68 16 21 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 22 C -0.08 -1.57 5.12 30.46 0.16 -1.42 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.34 11.93 8.73 -89.69 -0.78 11.14 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 1.77 7.49 -2.39 -0.02 1.75 16 32 H 0.06 1.36 7.11 -2.39 -0.02 1.34 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.58 7.26 -2.39 -0.02 1.57 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -63.17 301.16 1.94 -61.23 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.22 Total: 15.51 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 2.40 Total: -38.12 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.71 Total: -85.39 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.17 1.94 -61.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403220228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.714 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds