Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46803 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99833 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.61515 * 35.36482 * 13 12 11 15 15 C 1.53296 * 109.62027 * 275.00513 * 13 12 11 16 16 C 1.52878 * 108.59372 * 165.82659 * 15 13 12 17 17 C 1.52075 * 110.51097 * 54.88894 * 16 15 13 18 18 H 1.08999 * 114.63407 * 194.37680 * 17 16 15 19 19 C 1.52304 * 119.84167 * 49.55190 * 17 16 15 20 20 C 1.52064 * 120.02176 * 338.29929 * 17 16 15 21 21 H 1.09001 * 117.25697 * 216.66602 * 20 17 16 22 22 C 1.52715 * 120.52226 * 5.29060 * 20 17 16 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 26 26 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 27 27 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 28 28 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 29 29 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 30 30 H 1.00899 * 111.00125 * 303.95687 * 12 11 10 31 31 H 1.09001 * 109.61650 * 285.55834 * 15 13 12 32 32 H 1.09003 * 109.62032 * 46.09865 * 15 13 12 33 33 H 1.08997 * 109.26892 * 175.15221 * 16 15 13 34 34 H 1.08994 * 109.26482 * 294.65956 * 16 15 13 35 35 H 1.08997 * 117.53606 * 357.55853 * 19 17 16 36 36 H 1.08996 * 117.53589 * 142.73146 * 19 17 16 37 37 H 1.09003 * 109.35701 * 218.31593 * 22 20 17 38 38 H 1.09003 * 109.35679 * 98.73989 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0413 -4.0215 0.0014 13 6 7.5097 -4.0607 0.0020 14 1 7.8976 -3.2333 0.5962 15 6 8.0282 -3.9488 -1.4363 16 6 9.5241 -3.6362 -1.3923 17 6 10.2611 -4.6745 -0.5608 18 1 11.2754 -4.3933 -0.2777 19 6 10.0296 -6.1572 -0.8209 20 6 9.5054 -5.5027 0.4665 21 1 10.0249 -5.7424 1.3943 22 6 7.9876 -5.3883 0.5902 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6803 -0.8889 25 1 3.8746 -0.6799 0.8911 26 1 3.6579 -3.1505 0.8908 27 1 3.6587 -3.1502 -0.8892 28 1 5.9150 -2.1226 -0.8890 29 1 5.9149 -2.1227 0.8910 30 1 5.6658 -4.5375 0.7830 31 1 7.8667 -4.8921 -1.9579 32 1 7.5019 -3.1466 -1.9537 33 1 9.9222 -3.6394 -2.4069 34 1 9.6727 -2.6509 -0.9506 35 1 9.2984 -6.4270 -1.5829 36 1 10.8876 -6.8239 -0.7353 37 1 7.7059 -5.4398 1.6420 38 1 7.5182 -6.2117 0.0520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403439710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = -4.370479 kcal Electronic energy + Delta-G solvation = -15081.758587 eV Core-core repulsion = 12730.455914 eV Total energy + Delta-G solvation = -2351.302673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82137 -36.35636 -33.77766 -32.08921 -31.30478 -29.61098 -26.20757 -24.61894 -22.56335 -21.59970 -21.00878 -20.06224 -18.47676 -16.67575 -16.50374 -15.57172 -14.83867 -14.25704 -14.08499 -14.05457 -13.89645 -13.17632 -12.65814 -12.51615 -12.30532 -11.98597 -11.80044 -11.46403 -11.23679 -11.08703 -10.85128 -10.74736 -10.58339 -9.97068 -9.87962 -9.78287 -9.68655 -9.49957 -9.13606 -8.50524 -8.19061 -6.00965 -3.98511 3.32849 3.39842 3.43834 3.53784 4.18975 4.48116 4.55720 4.64146 4.69083 4.90626 5.00525 5.12576 5.32972 5.34326 5.45210 5.48140 5.57247 5.64699 5.70564 5.77668 5.79638 5.92265 6.02725 6.03662 6.09987 6.17691 6.25713 6.34120 6.60334 6.63472 6.96069 7.28879 7.39261 7.48372 7.64071 7.83949 8.58621 9.04763 9.61786 11.12670 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058451 B = 0.004495 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.922285 B = 6227.187272 C = 6487.759015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.058 3.942 12 N -0.688 5.688 13 C 0.087 3.913 14 H 0.043 0.957 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.139 4.139 18 H 0.095 0.905 19 C -0.182 4.182 20 C -0.147 4.147 21 H 0.100 0.900 22 C -0.091 4.091 23 H 0.262 0.738 24 H 0.011 0.989 25 H 0.013 0.987 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.339 0.661 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.956 -9.576 -0.223 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.319 5.319 13 C -0.023 4.023 14 H 0.061 0.939 15 C -0.147 4.147 16 C -0.128 4.128 17 C -0.158 4.158 18 H 0.113 0.887 19 C -0.218 4.218 20 C -0.166 4.166 21 H 0.118 0.882 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.741 -9.527 -0.899 22.842 hybrid contribution 0.595 1.179 0.959 1.632 sum 21.336 -8.349 0.060 22.912 Atomic orbital electron populations 1.69922 1.06294 1.26811 1.51420 1.25048 0.94736 0.99174 0.94663 0.86764 0.80306 0.83626 0.78487 1.20290 1.19107 1.21435 1.21164 0.89557 0.94454 1.50453 0.91030 1.19544 0.97128 0.92358 0.96070 1.21445 0.91190 0.99583 1.01529 1.22179 0.97471 0.87743 0.99713 1.60556 1.06375 1.15084 1.49845 1.21511 0.88201 0.96367 0.96207 0.93907 1.21597 0.94020 1.02439 0.96661 1.20883 0.95109 0.97549 0.99230 1.21840 0.99691 0.92731 1.01506 0.88688 1.23126 1.03447 0.95280 0.99992 1.22167 0.95492 1.05217 0.93678 0.88219 1.21209 0.92762 0.97990 1.00882 0.92796 0.97086 0.96884 0.93064 0.91990 0.91562 0.95902 0.84347 0.91560 0.91278 0.91476 0.91633 0.88507 0.89242 0.91837 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.02 5.41 -26.73 -0.14 -2.17 16 11 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 12 N -0.69 -9.85 6.31 -106.63 -0.67 -10.52 16 13 C 0.09 1.06 2.46 -67.63 -0.17 0.89 16 14 H 0.04 0.56 7.72 -51.93 -0.40 0.16 16 15 C -0.11 -1.27 5.27 -26.64 -0.14 -1.41 16 16 C -0.09 -0.88 5.93 -27.26 -0.16 -1.04 16 17 C -0.14 -1.27 6.00 -91.92 -0.55 -1.82 16 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.18 -1.57 9.66 -26.75 -0.26 -1.83 16 20 C -0.15 -1.36 6.19 -90.91 -0.56 -1.93 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.09 -0.94 5.11 -26.94 -0.14 -1.07 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 25 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.12 7.33 -51.93 -0.38 0.74 16 29 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 30 H 0.34 4.55 8.38 -39.29 -0.33 4.22 16 31 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 32 H 0.07 0.89 7.28 -51.93 -0.38 0.51 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.88 7.26 -51.93 -0.38 0.50 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -30.45 296.58 -9.59 -40.04 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.81 Total: -0.27 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.69 Total: -23.52 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.10 Total: -38.18 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.45 -9.59 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403439710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.674 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds