Wall clock time and date at job start Mon Mar 30 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46803 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99833 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.61515 * 35.36482 * 13 12 11 15 15 C 1.53296 * 109.62027 * 275.00513 * 13 12 11 16 16 C 1.52878 * 108.59372 * 165.82659 * 15 13 12 17 17 C 1.52075 * 110.51097 * 54.88894 * 16 15 13 18 18 H 1.08999 * 114.63407 * 194.37680 * 17 16 15 19 19 C 1.52304 * 119.84167 * 49.55190 * 17 16 15 20 20 C 1.52064 * 120.02176 * 338.29929 * 17 16 15 21 21 H 1.09001 * 117.25697 * 216.66602 * 20 17 16 22 22 C 1.52715 * 120.52226 * 5.29060 * 20 17 16 23 23 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 25 25 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 26 26 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 27 27 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 28 28 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 29 29 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 30 30 H 1.00899 * 111.00125 * 303.95687 * 12 11 10 31 31 H 1.09001 * 109.61650 * 285.55834 * 15 13 12 32 32 H 1.09003 * 109.62032 * 46.09865 * 15 13 12 33 33 H 1.08997 * 109.26892 * 175.15221 * 16 15 13 34 34 H 1.08994 * 109.26482 * 294.65956 * 16 15 13 35 35 H 1.08997 * 117.53606 * 357.55853 * 19 17 16 36 36 H 1.08996 * 117.53589 * 142.73146 * 19 17 16 37 37 H 1.09003 * 109.35701 * 218.31593 * 22 20 17 38 38 H 1.09003 * 109.35679 * 98.73989 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0413 -4.0215 0.0014 13 6 7.5097 -4.0607 0.0020 14 1 7.8976 -3.2333 0.5962 15 6 8.0282 -3.9488 -1.4363 16 6 9.5241 -3.6362 -1.3923 17 6 10.2611 -4.6745 -0.5608 18 1 11.2754 -4.3933 -0.2777 19 6 10.0296 -6.1572 -0.8209 20 6 9.5054 -5.5027 0.4665 21 1 10.0249 -5.7424 1.3943 22 6 7.9876 -5.3883 0.5902 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6803 -0.8889 25 1 3.8746 -0.6799 0.8911 26 1 3.6579 -3.1505 0.8908 27 1 3.6587 -3.1502 -0.8892 28 1 5.9150 -2.1226 -0.8890 29 1 5.9149 -2.1227 0.8910 30 1 5.6658 -4.5375 0.7830 31 1 7.8667 -4.8921 -1.9579 32 1 7.5019 -3.1466 -1.9537 33 1 9.9222 -3.6394 -2.4069 34 1 9.6727 -2.6509 -0.9506 35 1 9.2984 -6.4270 -1.5829 36 1 10.8876 -6.8239 -0.7353 37 1 7.7059 -5.4398 1.6420 38 1 7.5182 -6.2117 0.0520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403439710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:32 Heat of formation + Delta-G solvation = -22.725220 kcal Electronic energy + Delta-G solvation = -15082.554508 eV Core-core repulsion = 12730.455914 eV Total energy + Delta-G solvation = -2352.098595 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63286 -37.58957 -35.54413 -33.82528 -32.32409 -30.92564 -27.90726 -25.43959 -24.17994 -22.48902 -22.01727 -21.70258 -19.33830 -18.86500 -17.29997 -16.75603 -16.42610 -15.75873 -15.43186 -15.06933 -14.79375 -14.76113 -14.14227 -13.79410 -13.59550 -13.31500 -12.88148 -12.83286 -12.53967 -12.37096 -12.14401 -11.90078 -11.80190 -11.58558 -11.45351 -11.34149 -11.19530 -10.76705 -10.62760 -10.51197 -9.34524 -8.29747 -6.34182 1.35735 1.37642 1.49912 2.36268 2.83378 3.05346 3.15920 3.78147 3.87968 3.91256 4.07887 4.19715 4.22834 4.32462 4.36517 4.49099 4.61408 4.67447 4.70499 4.81078 4.87602 4.95161 4.96301 5.01654 5.11034 5.14193 5.24124 5.27254 5.35185 5.39530 5.44637 5.51824 5.61040 5.66110 6.15114 6.29668 6.51454 6.74088 7.30436 8.87343 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058451 B = 0.004495 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.922285 B = 6227.187272 C = 6487.759015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.246 1.246 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.693 5.693 13 C 0.088 3.912 14 H 0.039 0.961 15 C -0.108 4.108 16 C -0.087 4.087 17 C -0.142 4.142 18 H 0.108 0.892 19 C -0.177 4.177 20 C -0.153 4.153 21 H 0.111 0.889 22 C -0.086 4.086 23 H 0.267 0.733 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.343 0.657 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.703 -9.086 -0.011 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.170 1.170 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.324 5.324 13 C -0.022 4.022 14 H 0.057 0.943 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.160 4.160 18 H 0.126 0.874 19 C -0.214 4.214 20 C -0.172 4.172 21 H 0.130 0.870 22 C -0.124 4.124 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.162 0.838 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.507 -9.062 -0.686 25.202 hybrid contribution -0.339 0.926 0.880 1.322 sum 23.167 -8.136 0.194 24.555 Atomic orbital electron populations 1.70080 1.08368 1.28212 1.52719 1.26081 0.95675 1.03716 0.94054 0.85595 0.79434 0.77940 0.79281 1.19054 1.16978 1.20840 1.21523 0.92268 0.93079 1.50393 0.95247 1.19490 0.93800 0.95069 0.96444 1.21270 0.93985 0.96889 1.00727 1.21896 0.94487 0.89314 1.00030 1.60505 1.08016 1.13584 1.50298 1.21565 0.86560 0.97361 0.96698 0.94296 1.21573 0.95317 1.01696 0.96016 1.20857 0.93733 0.97875 1.00044 1.21894 1.00146 0.92746 1.01261 0.87386 1.23164 1.03669 0.95280 0.99272 1.22204 0.94654 1.05816 0.94505 0.87049 1.21156 0.93724 0.96558 1.00981 0.92466 0.96341 0.96219 0.93438 0.93333 0.91474 0.95330 0.83809 0.91890 0.92782 0.90608 0.91578 0.89166 0.87802 0.91247 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.53 -31.90 9.66 25.60 0.25 -31.65 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 10 C -0.09 -3.66 5.41 30.60 0.17 -3.50 16 11 C 0.07 2.31 5.48 86.31 0.47 2.78 16 12 N -0.69 -19.02 6.31 -491.27 -3.10 -22.12 16 13 C 0.09 2.00 2.46 44.97 0.11 2.11 16 14 H 0.04 0.94 7.72 -2.39 -0.02 0.92 16 15 C -0.11 -2.36 5.27 30.65 0.16 -2.20 16 16 C -0.09 -1.53 5.93 30.25 0.18 -1.35 16 17 C -0.14 -2.23 6.00 -11.64 -0.07 -2.30 16 18 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 19 C -0.18 -2.64 9.66 30.58 0.30 -2.34 16 20 C -0.15 -2.47 6.19 -10.98 -0.07 -2.54 16 21 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 22 C -0.09 -1.63 5.11 30.46 0.16 -1.47 16 23 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 25 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.15 7.33 -2.39 -0.02 2.14 16 29 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 30 H 0.34 8.84 8.38 -89.70 -0.75 8.09 16 31 H 0.06 1.40 7.11 -2.39 -0.02 1.39 16 32 H 0.05 1.33 7.28 -2.39 -0.02 1.32 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.47 7.26 -2.39 -0.02 1.45 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.39 8.06 -2.39 -0.02 1.38 16 Total: -1.00 -65.60 296.58 1.52 -64.08 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.20 Total: 14.25 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 2.23 Total: -42.30 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.80 Total: -82.96 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -65.60 1.52 -64.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403439710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.357 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds