Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48498 * 109.46989 * 239.99779 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47129 * 119.99933 * 3 2 1 7 7 C 1.37880 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99513 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46910 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47266 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47157 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99763 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.61413 * 34.64437 * 13 12 11 15 15 C 1.53292 * 109.62018 * 274.10251 * 13 12 11 16 16 C 1.50931 * 108.42490 * 166.06702 * 15 13 12 17 17 C 1.52710 * 111.21194 * 54.44138 * 16 15 13 18 18 H 1.09002 * 115.38957 * 127.55855 * 17 16 15 19 19 C 1.53649 * 116.03119 * 270.18272 * 17 16 15 20 20 C 1.52076 * 119.79495 * 338.69851 * 17 16 15 21 21 H 1.09006 * 115.92518 * 148.93146 * 20 17 16 22 22 C 1.52071 * 120.01897 * 4.96079 * 20 17 16 23 23 H 0.96995 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47293 * 59.99786 * 9 7 2 25 25 H 1.09005 * 109.47100 * 299.99595 * 9 7 2 26 26 H 1.09002 * 109.47839 * 59.99909 * 10 9 7 27 27 H 1.09001 * 109.47494 * 299.99636 * 10 9 7 28 28 H 1.09002 * 109.46647 * 59.99324 * 11 10 9 29 29 H 1.09001 * 109.46685 * 300.00276 * 11 10 9 30 30 H 1.00898 * 111.00090 * 303.95108 * 12 11 10 31 31 H 1.09012 * 109.61820 * 285.55367 * 15 13 12 32 32 H 1.08996 * 109.62076 * 45.91004 * 15 13 12 33 33 H 1.09000 * 108.51517 * 294.11897 * 16 15 13 34 34 H 1.08998 * 109.13293 * 175.16829 * 16 15 13 35 35 H 1.08999 * 117.54053 * 218.19321 * 19 17 16 36 36 H 1.09003 * 117.54080 * 3.44410 * 19 17 16 37 37 H 1.09002 * 109.26592 * 98.56874 * 22 20 17 38 38 H 1.09000 * 109.26245 * 218.06845 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4348 -6.1036 0.0006 13 6 1.7344 -7.3950 0.0018 14 1 0.8169 -7.3141 -0.5810 15 6 1.3998 -7.7977 1.4425 16 6 0.3981 -8.9259 1.4020 17 6 0.9050 -10.0845 0.5460 18 1 0.8893 -11.0626 1.0268 19 6 0.5422 -10.0297 -0.9460 20 6 1.9847 -9.8380 -0.4963 21 1 2.6590 -10.6722 -0.6904 22 6 2.6364 -8.4685 -0.6074 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8720 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.0691 -6.0367 -0.7813 31 1 2.3053 -8.1331 1.9485 32 1 0.9792 -6.9435 1.9730 33 1 -0.5334 -8.5468 0.9816 34 1 0.2166 -9.2791 2.4171 35 1 0.2882 -10.9687 -1.4377 36 1 0.0044 -9.1510 -1.3020 37 1 3.5896 -8.4799 -0.0789 38 1 2.8105 -8.2374 -1.6583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403439715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -7.899194 kcal Electronic energy + Delta-G solvation = -15065.219896 eV Core-core repulsion = 12713.764206 eV Total energy + Delta-G solvation = -2351.455690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84212 -36.21454 -33.71537 -32.13534 -31.27256 -29.33166 -25.91731 -24.32812 -22.81666 -21.59788 -21.03685 -20.12763 -18.44492 -16.44682 -16.24997 -15.29677 -14.58936 -14.49238 -14.27794 -13.99238 -13.79807 -13.16464 -12.58541 -12.35271 -12.16917 -11.79733 -11.70757 -11.31740 -11.09459 -10.96839 -10.78899 -10.59153 -10.46781 -10.34925 -9.89964 -9.75349 -9.64058 -9.28559 -9.02473 -8.30962 -8.11151 -5.96318 -3.98386 3.36100 3.39994 3.42915 3.58753 4.32596 4.47660 4.50906 4.61425 4.81097 4.93480 5.12248 5.21383 5.39299 5.40116 5.45389 5.55660 5.64671 5.70775 5.79400 5.82489 5.93186 6.00656 6.05847 6.09196 6.19629 6.26804 6.35000 6.44643 6.76708 6.83469 7.17988 7.42445 7.69924 7.72500 7.87741 8.04281 8.47667 9.08673 9.65356 11.15162 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066551 B = 0.004173 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.627003 B = 6708.497405 C = 6841.300276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.688 5.688 13 C 0.085 3.915 14 H 0.042 0.958 15 C -0.106 4.106 16 C -0.091 4.091 17 C -0.145 4.145 18 H 0.100 0.900 19 C -0.186 4.186 20 C -0.137 4.137 21 H 0.097 0.903 22 C -0.091 4.091 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -19.713 -0.286 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.318 5.318 13 C -0.025 4.025 14 H 0.060 0.940 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.164 4.164 18 H 0.118 0.882 19 C -0.222 4.222 20 C -0.155 4.155 21 H 0.115 0.885 22 C -0.128 4.128 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.066 -19.574 0.393 19.686 hybrid contribution 0.043 0.852 -0.990 1.307 sum 2.109 -18.721 -0.598 18.849 Atomic orbital electron populations 1.69960 1.06064 1.26641 1.51001 1.25032 0.94848 0.99242 0.95392 0.86651 0.79568 0.83123 0.78620 1.20281 1.21321 1.20213 1.21231 0.93026 0.91089 1.50401 0.92724 1.19061 0.94028 0.91396 0.97074 1.21625 0.99164 0.93028 1.00675 1.22155 0.94123 0.90815 0.99749 1.60580 1.20414 1.01196 1.49656 1.21562 0.95584 0.89150 0.96237 0.94049 1.21213 0.99210 0.97463 0.96570 1.20718 0.98757 0.94186 0.99211 1.22236 1.03375 0.99879 0.90876 0.88155 1.23151 0.98617 1.02891 0.97587 1.21765 0.91627 0.98586 1.03561 0.88484 1.21024 0.99111 0.92054 1.00651 0.93004 0.96863 0.96600 0.92577 0.93706 0.95941 0.91547 0.84539 0.91527 0.91241 0.91915 0.91579 0.89160 0.88736 0.90543 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.08 5.47 -3.82 -0.02 1.06 16 12 N -0.69 -10.36 6.32 -106.63 -0.67 -11.03 16 13 C 0.08 1.09 2.24 -67.62 -0.15 0.93 16 14 H 0.04 0.57 6.78 -51.93 -0.35 0.22 16 15 C -0.11 -1.31 5.46 -27.62 -0.15 -1.46 16 16 C -0.09 -0.95 5.67 -27.92 -0.16 -1.11 16 17 C -0.15 -1.40 6.24 -90.90 -0.57 -1.96 16 18 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 19 C -0.19 -1.75 9.67 -26.75 -0.26 -2.01 16 20 C -0.14 -1.33 6.00 -91.92 -0.55 -1.88 16 21 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.09 -0.98 5.20 -27.27 -0.14 -1.12 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 29 H 0.07 1.22 7.40 -51.93 -0.38 0.84 16 30 H 0.34 4.74 8.37 -39.29 -0.33 4.42 16 31 H 0.07 0.82 8.04 -51.92 -0.42 0.40 16 32 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 33 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.97 7.27 -51.93 -0.38 0.60 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -29.97 300.14 -9.98 -39.95 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.85 Total: -0.34 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.69 Total: -23.38 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.06 Total: -37.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.97 -9.98 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403439715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds