Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48498 * 109.46989 * 239.99779 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47129 * 119.99933 * 3 2 1 7 7 C 1.37880 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99513 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46910 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47266 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47157 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99763 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.61413 * 34.64437 * 13 12 11 15 15 C 1.53292 * 109.62018 * 274.10251 * 13 12 11 16 16 C 1.50931 * 108.42490 * 166.06702 * 15 13 12 17 17 C 1.52710 * 111.21194 * 54.44138 * 16 15 13 18 18 H 1.09002 * 115.38957 * 127.55855 * 17 16 15 19 19 C 1.53649 * 116.03119 * 270.18272 * 17 16 15 20 20 C 1.52076 * 119.79495 * 338.69851 * 17 16 15 21 21 H 1.09006 * 115.92518 * 148.93146 * 20 17 16 22 22 C 1.52071 * 120.01897 * 4.96079 * 20 17 16 23 23 H 0.96995 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47293 * 59.99786 * 9 7 2 25 25 H 1.09005 * 109.47100 * 299.99595 * 9 7 2 26 26 H 1.09002 * 109.47839 * 59.99909 * 10 9 7 27 27 H 1.09001 * 109.47494 * 299.99636 * 10 9 7 28 28 H 1.09002 * 109.46647 * 59.99324 * 11 10 9 29 29 H 1.09001 * 109.46685 * 300.00276 * 11 10 9 30 30 H 1.00898 * 111.00090 * 303.95108 * 12 11 10 31 31 H 1.09012 * 109.61820 * 285.55367 * 15 13 12 32 32 H 1.08996 * 109.62076 * 45.91004 * 15 13 12 33 33 H 1.09000 * 108.51517 * 294.11897 * 16 15 13 34 34 H 1.08998 * 109.13293 * 175.16829 * 16 15 13 35 35 H 1.08999 * 117.54053 * 218.19321 * 19 17 16 36 36 H 1.09003 * 117.54080 * 3.44410 * 19 17 16 37 37 H 1.09002 * 109.26592 * 98.56874 * 22 20 17 38 38 H 1.09000 * 109.26245 * 218.06845 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4348 -6.1036 0.0006 13 6 1.7344 -7.3950 0.0018 14 1 0.8169 -7.3141 -0.5810 15 6 1.3998 -7.7977 1.4425 16 6 0.3981 -8.9259 1.4020 17 6 0.9050 -10.0845 0.5460 18 1 0.8893 -11.0626 1.0268 19 6 0.5422 -10.0297 -0.9460 20 6 1.9847 -9.8380 -0.4963 21 1 2.6590 -10.6722 -0.6904 22 6 2.6364 -8.4685 -0.6074 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8720 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.0691 -6.0367 -0.7813 31 1 2.3053 -8.1331 1.9485 32 1 0.9792 -6.9435 1.9730 33 1 -0.5334 -8.5468 0.9816 34 1 0.2166 -9.2791 2.4171 35 1 0.2882 -10.9687 -1.4377 36 1 0.0044 -9.1510 -1.3020 37 1 3.5896 -8.4799 -0.0789 38 1 2.8105 -8.2374 -1.6583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403439715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -25.128100 kcal Electronic energy + Delta-G solvation = -15065.966998 eV Core-core repulsion = 12713.764206 eV Total energy + Delta-G solvation = -2352.202791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72361 -37.54487 -35.56718 -33.72342 -32.43779 -30.72211 -27.73152 -25.27390 -24.50230 -22.64788 -22.04732 -21.80078 -19.36411 -18.46138 -17.38008 -16.63840 -16.49205 -15.62644 -15.41805 -15.19391 -14.92463 -14.43447 -14.13805 -13.84107 -13.42676 -13.27843 -13.03032 -12.73824 -12.53487 -12.43490 -12.28010 -11.98679 -11.85475 -11.59305 -11.46944 -11.30118 -11.01090 -10.66587 -10.55558 -10.54773 -9.37917 -8.20409 -6.31938 1.39993 1.43578 1.51534 2.41081 2.82753 3.12498 3.18013 3.65160 3.79222 4.01591 4.09828 4.15848 4.25648 4.29953 4.41504 4.51435 4.59000 4.66238 4.71140 4.78261 4.93429 4.95596 4.97598 5.07526 5.18584 5.19831 5.23176 5.27067 5.35047 5.37381 5.45407 5.51538 5.73464 5.84625 6.09465 6.26604 6.51312 6.84691 7.37386 8.91488 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066551 B = 0.004173 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.627003 B = 6708.497405 C = 6841.300276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.687 5.687 13 C 0.084 3.916 14 H 0.032 0.968 15 C -0.105 4.105 16 C -0.090 4.090 17 C -0.147 4.147 18 H 0.118 0.882 19 C -0.186 4.186 20 C -0.138 4.138 21 H 0.115 0.885 22 C -0.086 4.086 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -20.630 -0.465 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.318 5.318 13 C -0.026 4.026 14 H 0.050 0.950 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.165 4.165 18 H 0.136 0.864 19 C -0.223 4.223 20 C -0.157 4.157 21 H 0.133 0.867 22 C -0.124 4.124 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.375 -20.512 0.210 20.789 hybrid contribution -0.396 1.118 -0.927 1.506 sum 2.979 -19.394 -0.717 19.635 Atomic orbital electron populations 1.70098 1.07865 1.27879 1.51638 1.26017 0.95798 1.03473 0.94626 0.85469 0.78256 0.77893 0.79248 1.19073 1.20735 1.19136 1.21677 0.93576 0.92380 1.50683 0.92160 1.18970 0.94433 0.93217 0.94649 1.21376 0.97998 0.92825 1.00774 1.21834 0.93994 0.90413 0.99217 1.60515 1.19906 1.01273 1.50130 1.21626 0.95555 0.88629 0.96742 0.95020 1.21189 0.99702 0.97506 0.95903 1.20697 0.97807 0.93973 1.00271 1.22295 1.03289 1.00091 0.90828 0.86438 1.23181 0.98358 1.03141 0.97627 1.21814 0.91955 0.98281 1.03655 0.86721 1.20976 0.98710 0.91954 1.00732 0.92739 0.99195 0.99156 0.92858 0.92991 0.96330 0.92378 0.83705 0.91344 0.93229 0.92668 0.90362 0.87572 0.90051 0.90244 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.37 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.95 5.41 30.60 0.17 -3.78 16 11 C 0.07 2.71 5.47 86.31 0.47 3.18 16 12 N -0.69 -20.27 6.32 -491.27 -3.10 -23.38 16 13 C 0.08 2.10 2.24 44.97 0.10 2.20 16 14 H 0.03 0.87 6.78 -2.39 -0.02 0.85 16 15 C -0.10 -2.53 5.46 30.02 0.16 -2.36 16 16 C -0.09 -1.77 5.67 29.82 0.17 -1.60 16 17 C -0.15 -2.49 6.24 -10.98 -0.07 -2.56 16 18 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.19 -3.16 9.67 30.58 0.30 -2.86 16 20 C -0.14 -2.35 6.00 -11.63 -0.07 -2.42 16 21 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 22 C -0.09 -1.70 5.20 30.25 0.16 -1.54 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 29 H 0.06 2.20 7.40 -2.39 -0.02 2.18 16 30 H 0.34 9.30 8.37 -89.70 -0.75 8.55 16 31 H 0.07 1.61 8.04 -2.38 -0.02 1.59 16 32 H 0.05 1.38 7.35 -2.39 -0.02 1.36 16 33 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.60 7.27 -2.39 -0.02 1.58 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.02 300.14 1.70 -62.33 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.26 Total: 13.44 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 2.23 Total: -41.61 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.82 Total: -81.17 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.02 1.70 -62.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403439715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.201 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds