Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.52999 * 112.84624 * 179.97438 * 12 11 10 14 14 C 1.53790 * 113.61564 * 48.80681 * 13 12 11 15 15 C 1.53954 * 87.01906 * 220.04536 * 14 13 12 16 16 C 1.53780 * 113.62004 * 311.19651 * 13 12 11 17 17 C 1.53773 * 113.61415 * 48.80460 * 12 11 10 18 18 C 1.53953 * 87.02003 * 220.04534 * 17 12 11 19 19 C 1.53776 * 113.61530 * 311.19454 * 12 11 10 20 20 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 26 26 H 1.09006 * 112.85087 * 180.02562 * 13 12 11 27 27 H 1.08998 * 113.60840 * 334.56406 * 14 13 12 28 28 H 1.08997 * 113.61774 * 105.46618 * 14 13 12 29 29 H 1.08996 * 113.53925 * 270.81128 * 15 14 13 30 30 H 1.09003 * 113.74335 * 139.93800 * 15 14 13 31 31 H 1.08999 * 113.61662 * 254.53105 * 16 13 12 32 32 H 1.09007 * 113.60905 * 25.34688 * 16 13 12 33 33 H 1.08999 * 113.61732 * 334.56783 * 17 12 11 34 34 H 1.09002 * 113.61745 * 105.47368 * 17 12 11 35 35 H 1.08997 * 113.53946 * 270.81579 * 18 17 12 36 36 H 1.09001 * 113.74632 * 139.94566 * 18 17 12 37 37 H 1.08998 * 113.61403 * 254.53270 * 19 12 11 38 38 H 1.08999 * 113.61471 * 25.42921 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0037 13 6 1.7134 -7.4249 0.0048 14 6 0.6040 -7.5310 -1.0550 15 6 -0.2291 -8.2709 0.0073 16 6 0.6048 -7.5296 1.0655 17 6 3.5441 -5.9702 1.0638 18 6 4.5022 -6.5411 0.0025 19 6 3.5440 -5.9710 -1.0567 20 1 -0.4851 0.8400 -0.0004 21 1 0.6240 -2.5576 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8719 -3.6036 0.8927 24 1 2.8719 -3.6052 -0.8873 25 1 0.8740 -4.9839 0.7844 26 1 2.3993 -8.2721 0.0056 27 1 0.1846 -6.5678 -1.3458 28 1 0.8742 -8.1515 -1.9094 29 1 -0.0751 -9.3499 0.0074 30 1 -1.2834 -7.9938 0.0096 31 1 0.8757 -8.1491 1.9205 32 1 0.1866 -6.5660 1.3565 33 1 3.7746 -4.9451 1.3538 34 1 3.3952 -6.6297 1.9187 35 1 4.5539 -7.6299 0.0035 36 1 5.4854 -6.0707 0.0003 37 1 3.3949 -6.6312 -1.9111 38 1 3.7745 -4.9462 -1.3476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590971985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = 30.532585 kcal Electronic energy + Delta-G solvation = -15750.661099 eV Core-core repulsion = 13400.871936 eV Total energy + Delta-G solvation = -2349.789163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27926 -37.03736 -34.19343 -32.33223 -29.02854 -26.36459 -26.01098 -24.80756 -23.86773 -22.56210 -20.72174 -19.49642 -17.66866 -16.37728 -15.86363 -15.60789 -14.79549 -14.43046 -14.39605 -13.69241 -13.17501 -12.82383 -12.42921 -12.17278 -11.86130 -11.83797 -11.34650 -11.27048 -10.99203 -10.85653 -10.66626 -10.51216 -10.38235 -10.22695 -10.03235 -9.76094 -9.55276 -9.30325 -9.10115 -8.33080 -7.60996 -5.98051 -4.00434 3.33075 3.39105 3.42246 4.44361 4.54945 4.71907 4.80181 4.88789 4.99122 4.99730 5.06354 5.23534 5.37909 5.47796 5.69800 5.76069 5.87520 5.93416 5.98299 6.01685 6.05342 6.09426 6.17333 6.22591 6.30312 6.45011 6.48887 6.54317 6.71219 6.76193 7.07833 7.57803 7.77796 7.87867 8.04218 8.13191 8.46619 9.07039 9.63276 11.13409 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036301 B = 0.006266 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.139960 B = 4467.608996 C = 4963.556475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.062 3.938 11 N -0.673 5.673 12 C 0.106 3.894 13 C -0.083 4.083 14 C -0.126 4.126 15 C -0.144 4.144 16 C -0.136 4.136 17 C -0.179 4.179 18 C -0.139 4.139 19 C -0.131 4.131 20 H 0.260 0.740 21 H 0.024 0.976 22 H 0.012 0.988 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.334 0.666 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -15.643 0.636 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.066 4.066 11 N -0.303 5.303 12 C 0.014 3.986 13 C -0.101 4.101 14 C -0.164 4.164 15 C -0.181 4.181 16 C -0.173 4.173 17 C -0.219 4.219 18 C -0.177 4.177 19 C -0.169 4.169 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.670 -15.516 -0.046 15.944 hybrid contribution 0.849 0.997 0.975 1.633 sum 4.518 -14.519 0.929 15.234 Atomic orbital electron populations 1.69972 1.06024 1.26541 1.50751 1.24998 0.94826 0.99177 0.95348 0.86602 0.79800 0.83529 0.78107 1.20639 1.21238 1.19951 1.21178 0.92939 0.91057 1.50735 0.92841 1.19063 0.94057 0.90490 0.97576 1.22275 0.97220 0.88279 0.98782 1.60469 1.19237 1.01564 1.49032 1.22062 0.89865 0.91546 0.95117 1.22255 0.95144 0.95167 0.97571 1.22907 0.96206 1.01495 0.95769 1.22822 0.99082 0.98825 0.97406 1.22901 0.97165 1.00883 0.96398 1.23750 0.98630 1.01854 0.97662 1.22717 0.97680 0.99824 0.97483 1.23146 0.95165 1.01987 0.96621 0.93026 0.95752 0.96978 0.96240 0.92031 0.84602 0.89621 0.88136 0.92512 0.90997 0.91604 0.92246 0.89662 0.89314 0.92203 0.90825 0.91879 0.91809 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.06 1.31 4.82 -3.82 -0.02 1.29 16 11 N -0.67 -11.93 5.59 -99.15 -0.55 -12.49 16 12 C 0.11 1.56 1.06 -130.80 -0.14 1.42 16 13 C -0.08 -1.04 3.14 -89.80 -0.28 -1.32 16 14 C -0.13 -1.59 7.56 -25.82 -0.20 -1.79 16 15 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 16 C -0.14 -1.62 7.53 -25.92 -0.20 -1.82 16 17 C -0.18 -2.55 7.11 -25.83 -0.18 -2.73 16 18 C -0.14 -1.76 7.77 -25.83 -0.20 -1.96 16 19 C -0.13 -1.89 7.10 -25.92 -0.18 -2.08 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.02 0.41 5.97 -51.93 -0.31 0.10 16 24 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 25 H 0.33 5.87 6.79 -39.29 -0.27 5.60 16 26 H 0.09 0.99 7.56 -51.93 -0.39 0.60 16 27 H 0.10 1.49 7.43 -51.93 -0.39 1.11 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.12 6.22 -51.93 -0.32 0.79 16 33 H 0.09 1.42 5.78 -51.93 -0.30 1.12 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.09 1.46 5.78 -51.93 -0.30 1.16 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -29.27 292.19 -8.93 -38.20 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.33 Total: 3.36 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.16 Total: -23.88 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.18 Total: -38.90 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.27 -8.93 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590971985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.730 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds