Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 C 1.52999 * 112.84624 * 179.97438 * 12 11 10 14 14 C 1.53790 * 113.61564 * 48.80681 * 13 12 11 15 15 C 1.53954 * 87.01906 * 220.04536 * 14 13 12 16 16 C 1.53780 * 113.62004 * 311.19651 * 13 12 11 17 17 C 1.53773 * 113.61415 * 48.80460 * 12 11 10 18 18 C 1.53953 * 87.02003 * 220.04534 * 17 12 11 19 19 C 1.53776 * 113.61530 * 311.19454 * 12 11 10 20 20 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 26 26 H 1.09006 * 112.85087 * 180.02562 * 13 12 11 27 27 H 1.08998 * 113.60840 * 334.56406 * 14 13 12 28 28 H 1.08997 * 113.61774 * 105.46618 * 14 13 12 29 29 H 1.08996 * 113.53925 * 270.81128 * 15 14 13 30 30 H 1.09003 * 113.74335 * 139.93800 * 15 14 13 31 31 H 1.08999 * 113.61662 * 254.53105 * 16 13 12 32 32 H 1.09007 * 113.60905 * 25.34688 * 16 13 12 33 33 H 1.08999 * 113.61732 * 334.56783 * 17 12 11 34 34 H 1.09002 * 113.61745 * 105.47368 * 17 12 11 35 35 H 1.08997 * 113.53946 * 270.81579 * 18 17 12 36 36 H 1.09001 * 113.74632 * 139.94566 * 18 17 12 37 37 H 1.08998 * 113.61403 * 254.53270 * 19 12 11 38 38 H 1.08999 * 113.61471 * 25.42921 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4352 -6.0759 0.0037 13 6 1.7134 -7.4249 0.0048 14 6 0.6040 -7.5310 -1.0550 15 6 -0.2291 -8.2709 0.0073 16 6 0.6048 -7.5296 1.0655 17 6 3.5441 -5.9702 1.0638 18 6 4.5022 -6.5411 0.0025 19 6 3.5440 -5.9710 -1.0567 20 1 -0.4851 0.8400 -0.0004 21 1 0.6240 -2.5576 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8719 -3.6036 0.8927 24 1 2.8719 -3.6052 -0.8873 25 1 0.8740 -4.9839 0.7844 26 1 2.3993 -8.2721 0.0056 27 1 0.1846 -6.5678 -1.3458 28 1 0.8742 -8.1515 -1.9094 29 1 -0.0751 -9.3499 0.0074 30 1 -1.2834 -7.9938 0.0096 31 1 0.8757 -8.1491 1.9205 32 1 0.1866 -6.5660 1.3565 33 1 3.7746 -4.9451 1.3538 34 1 3.3952 -6.6297 1.9187 35 1 4.5539 -7.6299 0.0035 36 1 5.4854 -6.0707 0.0003 37 1 3.3949 -6.6312 -1.9111 38 1 3.7745 -4.9462 -1.3476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590971985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = 13.757820 kcal Electronic energy + Delta-G solvation = -15751.388507 eV Core-core repulsion = 13400.871936 eV Total energy + Delta-G solvation = -2350.516571 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41789 -38.09464 -36.02699 -34.26734 -30.86603 -27.69372 -27.08884 -25.85441 -25.70879 -23.67905 -22.54871 -20.53345 -18.98081 -18.35729 -17.26393 -16.73116 -16.41598 -16.04405 -15.73516 -14.91005 -14.57245 -14.26330 -14.07527 -13.48441 -13.23401 -13.22790 -12.97887 -12.77470 -12.45308 -12.36295 -12.06738 -11.91566 -11.74259 -11.40939 -11.32904 -11.31199 -11.10791 -10.91669 -10.62956 -10.56224 -9.05952 -8.21327 -6.32962 1.38926 1.40786 1.51713 2.39472 3.11959 3.31970 3.55293 3.75324 3.78056 3.92284 3.99451 4.07349 4.23482 4.35308 4.48003 4.64236 4.73051 4.80082 4.92517 4.93827 4.95774 5.02677 5.06543 5.10749 5.13232 5.17020 5.19685 5.27054 5.42372 5.49135 5.57044 5.69742 5.74167 5.82983 6.17375 6.37658 6.62797 6.84679 7.36398 8.90938 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036301 B = 0.006266 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.139960 B = 4467.608996 C = 4963.556475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.677 5.677 12 C 0.100 3.900 13 C -0.077 4.077 14 C -0.132 4.132 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.181 4.181 18 C -0.123 4.123 19 C -0.139 4.139 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.012 1.012 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.334 0.666 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -16.978 0.872 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.308 5.308 12 C 0.009 3.991 13 C -0.095 4.095 14 C -0.169 4.169 15 C -0.171 4.171 16 C -0.176 4.176 17 C -0.220 4.220 18 C -0.160 4.160 19 C -0.176 4.176 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.006 0.994 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.153 0.847 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.149 -16.872 0.188 17.641 hybrid contribution 0.343 1.376 0.888 1.673 sum 5.492 -15.495 1.076 16.475 Atomic orbital electron populations 1.70110 1.07845 1.27800 1.51452 1.25980 0.95765 1.03381 0.94598 0.85421 0.78618 0.78294 0.78546 1.19709 1.20603 1.18742 1.21600 0.93433 0.92294 1.50895 0.92322 1.18909 0.94305 0.92465 0.94737 1.21843 0.95684 0.88240 0.98671 1.60384 1.19803 1.01359 1.49237 1.22312 0.89627 0.91382 0.95780 1.22314 0.95300 0.94251 0.97667 1.22852 0.96763 1.00548 0.96752 1.22810 0.98577 0.99847 0.95893 1.22887 0.97109 1.00432 0.97149 1.23685 0.98885 1.01008 0.98440 1.22695 0.97067 1.01225 0.95051 1.23150 0.95859 1.01098 0.97531 0.92736 0.98997 0.99391 0.96147 0.92291 0.84668 0.87278 0.91135 0.91261 0.88717 0.91937 0.90590 0.91583 0.91655 0.90774 0.88210 0.91389 0.90705 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.83 5.23 29.85 0.16 1.99 16 10 C 0.08 3.66 4.82 86.30 0.42 4.07 16 11 N -0.68 -24.65 5.59 -467.59 -2.61 -27.26 16 12 C 0.10 2.85 1.06 4.05 0.00 2.86 16 13 C -0.08 -1.75 3.14 -10.27 -0.03 -1.79 16 14 C -0.13 -3.14 7.56 31.18 0.24 -2.90 16 15 C -0.13 -2.70 8.09 31.18 0.25 -2.45 16 16 C -0.14 -3.06 7.53 31.12 0.23 -2.82 16 17 C -0.18 -4.85 7.11 31.18 0.22 -4.62 16 18 C -0.12 -2.77 7.77 31.18 0.24 -2.53 16 19 C -0.14 -3.82 7.10 31.12 0.22 -3.60 16 20 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 23 H 0.02 0.88 5.97 -2.39 -0.01 0.87 16 24 H 0.06 2.59 5.97 -2.39 -0.01 2.57 16 25 H 0.33 12.16 6.79 -89.69 -0.61 11.55 16 26 H 0.11 2.06 7.56 -2.38 -0.02 2.04 16 27 H 0.07 2.12 7.43 -2.39 -0.02 2.10 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.72 6.22 -2.38 -0.01 1.70 16 33 H 0.06 2.07 5.78 -2.39 -0.01 2.05 16 34 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.10 1.78 7.72 -2.39 -0.02 1.76 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.87 8.10 -2.39 -0.02 1.86 16 38 H 0.07 2.15 5.78 -2.39 -0.01 2.14 16 Total: -1.00 -63.95 292.19 2.76 -61.19 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.42 Total: 19.59 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 2.65 Total: -42.86 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.33 Total: -84.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.95 2.76 -61.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590971985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.946 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds