Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86789 * 120.00383 * 2 1 4 4 H 1.48506 * 109.47436 * 269.99714 * 3 2 1 5 5 H 1.48506 * 109.47407 * 29.99608 * 3 2 1 6 6 H 1.48503 * 109.47427 * 150.00049 * 3 2 1 7 7 C 1.37885 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46870 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.47616 * 111.00033 * 91.52657 * 12 11 10 14 14 C 1.53618 * 88.07933 * 138.05625 * 13 12 11 15 15 C 1.46787 * 111.00244 * 187.28200 * 12 11 10 16 16 C 1.53680 * 115.02294 * 104.77694 * 15 12 11 17 17 C 1.55036 * 104.02776 * 207.12304 * 16 15 12 18 18 C 1.54945 * 102.83322 * 37.42623 * 17 16 15 19 19 C 1.53299 * 115.26605 * 339.18033 * 15 12 11 20 20 H 0.96999 * 119.99399 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47404 * 59.99953 * 9 7 2 22 22 H 1.08996 * 109.47379 * 299.99224 * 9 7 2 23 23 H 1.09000 * 109.46662 * 60.00095 * 10 9 7 24 24 H 1.08996 * 109.46977 * 300.00067 * 10 9 7 25 25 H 1.09000 * 109.47364 * 60.00569 * 11 10 9 26 26 H 1.09003 * 109.47548 * 300.00188 * 11 10 9 27 27 H 1.09000 * 113.45139 * 252.86216 * 13 12 11 28 28 H 1.08998 * 113.44778 * 23.25046 * 13 12 11 29 29 H 1.09001 * 114.20037 * 88.13071 * 14 13 12 30 30 H 1.09001 * 114.19909 * 220.93843 * 14 13 12 31 31 H 1.09006 * 110.51902 * 325.75830 * 16 15 12 32 32 H 1.09001 * 110.52117 * 88.48773 * 16 15 12 33 33 H 1.08993 * 110.73736 * 279.08643 * 17 16 15 34 34 H 1.09004 * 110.89488 * 155.83281 * 17 16 15 35 35 H 1.08997 * 110.47737 * 203.70211 * 18 17 16 36 36 H 1.08991 * 110.59248 * 81.12337 * 18 17 16 37 37 H 1.08999 * 110.07746 * 248.56484 * 19 15 12 38 38 H 1.08993 * 110.08580 * 10.07290 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4345 -6.1038 0.0018 13 6 2.7503 -6.5291 1.3797 14 6 2.6605 -7.9843 0.8959 15 6 1.7431 -7.3870 -0.1713 16 6 1.8782 -8.0151 -1.5674 17 6 0.5959 -8.8731 -1.7191 18 6 -0.4834 -8.0049 -1.0246 19 6 0.2512 -7.3791 0.1811 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8717 -3.6045 0.8906 24 1 2.8717 -3.6045 -0.8894 25 1 0.8531 -5.0451 -0.8886 26 1 0.8536 -5.0446 0.8914 27 1 3.7501 -6.2407 1.7043 28 1 1.9791 -6.2639 2.1029 29 1 3.5969 -8.3845 0.5070 30 1 2.1582 -8.6563 1.5918 31 1 1.9122 -7.2402 -2.3333 32 1 2.7670 -8.6439 -1.6191 33 1 0.7089 -9.8296 -1.2089 34 1 0.3516 -9.0246 -2.7705 35 1 -1.3124 -8.6261 -0.6856 36 1 -0.8416 -7.2269 -1.6986 37 1 0.0752 -7.9748 1.0768 38 1 -0.0907 -6.3564 0.3390 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593040625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = 12.027702 kcal Electronic energy + Delta-G solvation = -15583.043728 eV Core-core repulsion = 13232.452133 eV Total energy + Delta-G solvation = -2350.591595 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93896 -35.72212 -34.06230 -32.02775 -29.19440 -28.50022 -26.89860 -25.44415 -22.45687 -22.04148 -20.78428 -19.91731 -17.93062 -16.30812 -16.00616 -15.52980 -15.15111 -14.54666 -14.40185 -13.74063 -13.25907 -13.09330 -12.33356 -12.14492 -11.72674 -11.62123 -11.56339 -11.12187 -11.06267 -10.95855 -10.79271 -10.62419 -10.60296 -10.40774 -10.36121 -9.97302 -9.57984 -9.23764 -9.00901 -8.50046 -8.30817 -5.96303 -3.97997 3.34705 3.40470 3.44559 4.12491 4.45533 4.50416 4.56358 4.80255 5.03426 5.14930 5.32351 5.38733 5.40030 5.50537 5.60505 5.63719 5.71065 5.75169 5.87718 5.88365 5.90733 5.94628 6.02811 6.09184 6.19140 6.31687 6.36232 6.41642 6.60540 6.87292 6.92370 7.22589 7.46771 7.72743 7.87944 8.04559 8.48601 9.09227 9.65755 11.15259 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.005348 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.010642 B = 5234.065450 C = 5516.015584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.022 3.978 12 N -0.461 5.461 13 C -0.001 4.001 14 C -0.136 4.136 15 C 0.052 3.948 16 C -0.101 4.101 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.142 4.142 20 H 0.260 0.740 21 H 0.014 0.986 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -17.954 0.153 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.106 4.106 12 N -0.182 5.182 13 C -0.130 4.130 14 C -0.174 4.174 15 C -0.039 4.039 16 C -0.139 4.139 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.181 4.181 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.723 -17.575 -0.311 17.662 hybrid contribution -0.341 0.928 0.573 1.143 sum 1.383 -16.647 0.262 16.706 Atomic orbital electron populations 1.69972 1.06063 1.26500 1.51180 1.25030 0.94845 0.99239 0.95415 0.86597 0.79855 0.83470 0.78102 1.20662 1.21259 1.19878 1.21267 0.93067 0.91064 1.50155 0.92694 1.19084 0.94052 0.91519 0.96952 1.21527 0.98974 0.92530 1.00697 1.22830 0.94699 0.92654 1.00424 1.68909 1.30703 1.01169 1.17418 1.23762 1.02266 0.94641 0.92338 1.23237 1.00000 0.96334 0.97832 1.22832 0.92922 0.92346 0.95802 1.22170 0.97288 0.98456 0.96033 1.22505 0.95321 0.98201 1.00180 1.22322 0.97527 0.98945 0.97038 1.22551 0.94228 1.02753 0.98541 0.93081 0.96724 0.96903 0.93653 0.92821 0.91390 0.94004 0.90066 0.91499 0.89253 0.91118 0.90911 0.91519 0.91772 0.91719 0.91897 0.91485 0.91572 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.19 5.47 -26.73 -0.15 -2.33 16 11 C 0.02 0.40 3.54 -3.82 -0.01 0.38 16 12 N -0.46 -7.36 6.20 -231.15 -1.43 -8.79 16 13 C 0.00 -0.01 7.47 -8.53 -0.06 -0.08 16 14 C -0.14 -1.57 7.63 -26.47 -0.20 -1.77 16 15 C 0.05 0.68 1.13 -136.64 -0.15 0.52 16 16 C -0.10 -1.22 6.42 -25.30 -0.16 -1.38 16 17 C -0.12 -1.26 6.91 -24.63 -0.17 -1.43 16 18 C -0.12 -1.33 6.84 -24.95 -0.17 -1.50 16 19 C -0.14 -1.77 5.57 -25.83 -0.14 -1.91 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.26 7.72 -51.93 -0.40 0.86 16 26 H 0.04 0.75 6.02 -51.93 -0.31 0.44 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.92 7.41 -51.93 -0.38 0.53 16 29 H 0.09 0.97 7.98 -51.93 -0.41 0.56 16 30 H 0.07 0.70 7.87 -51.93 -0.41 0.30 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.73 7.83 -51.93 -0.41 0.33 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 38 H 0.08 1.19 4.97 -51.93 -0.26 0.93 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -30.52 295.88 -9.79 -40.31 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.76 Total: -3.31 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.78 Total: -22.99 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.70 Total: -35.60 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.52 -9.79 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593040625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.339 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds