Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86789 * 120.00383 * 2 1 4 4 H 1.48506 * 109.47436 * 269.99714 * 3 2 1 5 5 H 1.48506 * 109.47407 * 29.99608 * 3 2 1 6 6 H 1.48503 * 109.47427 * 150.00049 * 3 2 1 7 7 C 1.37885 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46870 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.47616 * 111.00033 * 91.52657 * 12 11 10 14 14 C 1.53618 * 88.07933 * 138.05625 * 13 12 11 15 15 C 1.46787 * 111.00244 * 187.28200 * 12 11 10 16 16 C 1.53680 * 115.02294 * 104.77694 * 15 12 11 17 17 C 1.55036 * 104.02776 * 207.12304 * 16 15 12 18 18 C 1.54945 * 102.83322 * 37.42623 * 17 16 15 19 19 C 1.53299 * 115.26605 * 339.18033 * 15 12 11 20 20 H 0.96999 * 119.99399 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47404 * 59.99953 * 9 7 2 22 22 H 1.08996 * 109.47379 * 299.99224 * 9 7 2 23 23 H 1.09000 * 109.46662 * 60.00095 * 10 9 7 24 24 H 1.08996 * 109.46977 * 300.00067 * 10 9 7 25 25 H 1.09000 * 109.47364 * 60.00569 * 11 10 9 26 26 H 1.09003 * 109.47548 * 300.00188 * 11 10 9 27 27 H 1.09000 * 113.45139 * 252.86216 * 13 12 11 28 28 H 1.08998 * 113.44778 * 23.25046 * 13 12 11 29 29 H 1.09001 * 114.20037 * 88.13071 * 14 13 12 30 30 H 1.09001 * 114.19909 * 220.93843 * 14 13 12 31 31 H 1.09006 * 110.51902 * 325.75830 * 16 15 12 32 32 H 1.09001 * 110.52117 * 88.48773 * 16 15 12 33 33 H 1.08993 * 110.73736 * 279.08643 * 17 16 15 34 34 H 1.09004 * 110.89488 * 155.83281 * 17 16 15 35 35 H 1.08997 * 110.47737 * 203.70211 * 18 17 16 36 36 H 1.08991 * 110.59248 * 81.12337 * 18 17 16 37 37 H 1.08999 * 110.07746 * 248.56484 * 19 15 12 38 38 H 1.08993 * 110.08580 * 10.07290 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4345 -6.1038 0.0018 13 6 2.7503 -6.5291 1.3797 14 6 2.6605 -7.9843 0.8959 15 6 1.7431 -7.3870 -0.1713 16 6 1.8782 -8.0151 -1.5674 17 6 0.5959 -8.8731 -1.7191 18 6 -0.4834 -8.0049 -1.0246 19 6 0.2512 -7.3791 0.1811 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8717 -3.6045 0.8906 24 1 2.8717 -3.6045 -0.8894 25 1 0.8531 -5.0451 -0.8886 26 1 0.8536 -5.0446 0.8914 27 1 3.7501 -6.2407 1.7043 28 1 1.9791 -6.2639 2.1029 29 1 3.5969 -8.3845 0.5070 30 1 2.1582 -8.6563 1.5918 31 1 1.9122 -7.2402 -2.3333 32 1 2.7670 -8.6439 -1.6191 33 1 0.7089 -9.8296 -1.2089 34 1 0.3516 -9.0246 -2.7705 35 1 -1.3124 -8.6261 -0.6856 36 1 -0.8416 -7.2269 -1.6986 37 1 0.0752 -7.9748 1.0768 38 1 -0.0907 -6.3564 0.3390 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593040625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = -6.979472 kcal Electronic energy + Delta-G solvation = -15583.867941 eV Core-core repulsion = 13232.452133 eV Total energy + Delta-G solvation = -2351.415808 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.03179 -36.85520 -35.91009 -33.98188 -30.72256 -29.58608 -27.87235 -27.27777 -24.22713 -23.07389 -22.08530 -21.35849 -19.05180 -18.43237 -17.17010 -16.70412 -16.47095 -16.34241 -15.73851 -15.08040 -14.55034 -14.24334 -14.12520 -13.68278 -13.42688 -12.85088 -12.80500 -12.64093 -12.44529 -12.35189 -12.17766 -11.92610 -11.88480 -11.82342 -11.46734 -11.39984 -11.32249 -10.97909 -10.96615 -10.58181 -9.72591 -8.22719 -6.34286 1.38056 1.40010 1.51366 2.39198 3.01035 3.10032 3.46862 3.59203 3.86860 3.95091 4.09474 4.24422 4.30204 4.40946 4.53216 4.56655 4.65134 4.66077 4.77007 4.78145 4.85087 4.92554 4.98975 5.05757 5.10296 5.12799 5.17886 5.19849 5.26751 5.39614 5.47382 5.48695 5.60337 5.73729 5.81680 6.15856 6.27054 6.81732 7.35009 8.89376 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.005348 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.010642 B = 5234.065450 C = 5516.015584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.084 4.084 11 C 0.039 3.961 12 N -0.481 5.481 13 C -0.009 4.009 14 C -0.116 4.116 15 C 0.046 3.954 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.143 4.143 20 H 0.265 0.735 21 H -0.010 1.010 22 H -0.009 1.009 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -19.204 0.464 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.089 4.089 12 N -0.202 5.202 13 C -0.138 4.138 14 C -0.154 4.154 15 C -0.044 4.044 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.181 4.181 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.009 0.991 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.623 -18.844 -0.002 19.025 hybrid contribution -0.642 1.299 0.476 1.525 sum 1.981 -17.545 0.474 17.663 Atomic orbital electron populations 1.70101 1.07821 1.27856 1.51593 1.26006 0.95818 1.03426 0.94539 0.85414 0.78633 0.78207 0.78601 1.19654 1.20400 1.18807 1.21676 0.93446 0.92445 1.50769 0.92487 1.18967 0.94328 0.93146 0.94597 1.21278 0.97846 0.93000 1.00132 1.22503 0.94446 0.92030 0.99925 1.68878 1.30553 1.01588 1.19227 1.23864 1.02190 0.96525 0.91193 1.23191 1.00124 0.95068 0.96991 1.23016 0.93484 0.90743 0.97189 1.22202 0.99023 0.98324 0.94651 1.22482 0.93570 0.98316 1.00920 1.22341 0.98356 0.98937 0.96305 1.22548 0.93935 1.01704 0.99938 0.92673 0.99210 0.99086 0.93713 0.93603 0.92462 0.94048 0.90008 0.91651 0.88167 0.88733 0.93153 0.90201 0.89808 0.90863 0.90101 0.93065 0.89873 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.08 -3.84 5.47 30.60 0.17 -3.67 16 11 C 0.04 1.48 3.54 86.30 0.31 1.79 16 12 N -0.48 -15.19 6.20 -885.21 -5.48 -20.68 16 13 C -0.01 -0.23 7.47 82.86 0.62 0.38 16 14 C -0.12 -2.34 7.63 30.76 0.23 -2.11 16 15 C 0.05 1.14 1.13 0.32 0.00 1.14 16 16 C -0.10 -2.33 6.42 31.52 0.20 -2.13 16 17 C -0.12 -2.06 6.91 31.96 0.22 -1.84 16 18 C -0.12 -2.50 6.84 31.75 0.22 -2.29 16 19 C -0.14 -3.38 5.57 31.18 0.17 -3.20 16 20 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 23 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 2.24 7.72 -2.39 -0.02 2.22 16 26 H 0.04 1.54 6.02 -2.39 -0.01 1.53 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.74 7.41 -2.39 -0.02 1.72 16 29 H 0.10 1.84 7.98 -2.39 -0.02 1.82 16 30 H 0.09 1.50 7.87 -2.39 -0.02 1.49 16 31 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 1.56 7.83 -2.39 -0.02 1.54 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.66 7.73 -2.39 -0.02 1.65 16 38 H 0.06 1.69 4.97 -2.39 -0.01 1.68 16 Total: -1.00 -66.17 295.88 0.81 -65.36 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.00 Total: 8.01 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 2.99 Total: -42.20 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -5.20 Total: -78.70 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.17 0.81 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593040625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.381 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds