Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46897 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.05304 * 325.70271 * 13 12 11 15 15 C 1.54384 * 110.07147 * 87.19173 * 13 12 11 16 16 C 1.54915 * 104.22878 * 142.77777 * 15 13 12 17 17 C 1.54992 * 102.81932 * 322.28065 * 16 15 13 18 18 C 1.53483 * 110.06837 * 204.21688 * 13 12 11 19 19 C 1.52569 * 121.05386 * 96.56768 * 18 13 12 20 20 C 1.52550 * 121.08950 * 24.85137 * 18 13 12 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 27 27 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 28 28 H 1.00896 * 111.00031 * 56.04700 * 12 11 10 29 29 H 1.09007 * 110.47815 * 261.46505 * 15 13 12 30 30 H 1.08999 * 110.48219 * 24.09100 * 15 13 12 31 31 H 1.09007 * 110.74588 * 80.61057 * 16 15 13 32 32 H 1.08995 * 110.74810 * 203.76456 * 16 15 13 33 33 H 1.09002 * 110.51121 * 156.21423 * 17 16 15 34 34 H 1.08997 * 110.51215 * 278.78722 * 17 16 15 35 35 H 1.08995 * 117.51062 * 356.97591 * 19 18 13 36 36 H 1.08998 * 117.50913 * 142.05911 * 19 18 13 37 37 H 1.09005 * 117.51080 * 217.88492 * 20 18 13 38 38 H 1.08995 * 117.50929 * 2.93364 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6365 -0.0012 12 7 6.0412 -4.0215 -0.0004 13 6 7.5097 -4.0607 -0.0010 14 1 7.9056 -3.2255 -0.5786 15 6 8.0418 -4.0028 1.4471 16 6 9.2709 -4.9457 1.4391 17 6 8.8147 -6.0973 0.5075 18 6 8.0009 -5.3894 -0.5916 19 6 8.4081 -5.4961 -2.0581 20 6 7.1358 -6.1879 -1.5618 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 3.6585 -3.1502 0.8903 25 1 3.6578 -3.1505 -0.8897 26 1 5.9142 -2.1230 -0.8916 27 1 5.9156 -2.1224 0.8884 28 1 5.6651 -4.5384 -0.7810 29 1 8.3423 -2.9866 1.7027 30 1 7.2875 -4.3654 2.1454 31 1 10.1437 -4.4389 1.0275 32 1 9.4794 -5.3168 2.4425 33 1 9.6779 -6.6043 0.0761 34 1 8.1904 -6.8052 1.0527 35 1 8.2891 -4.6086 -2.6795 36 1 9.2635 -6.1275 -2.2984 37 1 7.1543 -7.2744 -1.4758 38 1 6.1795 -5.7557 -1.8564 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595009254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = 2.123406 kcal Electronic energy + Delta-G solvation = -15175.681897 eV Core-core repulsion = 12824.660819 eV Total energy + Delta-G solvation = -2351.021077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63920 -35.67962 -34.18608 -33.08642 -31.21437 -27.81701 -26.29985 -24.64616 -22.78591 -22.01647 -20.53106 -20.14227 -18.55176 -16.71501 -15.95155 -15.71804 -15.28970 -14.58475 -14.29382 -13.75792 -13.53266 -12.81208 -12.67582 -12.56757 -12.23701 -11.76079 -11.59535 -11.33164 -11.12287 -10.90334 -10.83395 -10.76020 -10.61981 -10.35734 -10.00497 -9.82999 -9.69629 -9.49890 -9.13712 -8.50699 -8.16128 -6.01053 -3.98606 3.32448 3.39738 3.44018 3.59027 4.29597 4.38836 4.48038 4.56100 4.72307 4.85820 5.11950 5.15210 5.32921 5.40309 5.49692 5.51819 5.62505 5.72031 5.75485 5.81035 5.83911 5.89072 5.96397 5.98907 6.05087 6.10984 6.21599 6.35226 6.59647 6.64523 6.95324 7.30324 7.40585 7.48046 7.65259 7.83845 8.58532 9.04606 9.61744 11.12591 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045955 B = 0.004894 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.150381 B = 5719.398246 C = 5948.313566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.684 5.684 13 C 0.115 3.885 14 H 0.044 0.956 15 C -0.112 4.112 16 C -0.122 4.122 17 C -0.083 4.083 18 C -0.129 4.129 19 C -0.173 4.173 20 C -0.166 4.166 21 H 0.262 0.738 22 H 0.016 0.984 23 H 0.008 0.992 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.338 0.662 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.507 -10.633 -0.797 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.073 4.073 12 N -0.317 5.317 13 C 0.005 3.995 14 H 0.062 0.938 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.210 4.210 20 C -0.204 4.204 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.026 0.974 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.287 -10.571 -0.116 21.995 hybrid contribution 0.473 1.253 -1.039 1.695 sum 19.761 -9.319 -1.156 21.878 Atomic orbital electron populations 1.69920 1.06296 1.26808 1.51418 1.25039 0.94726 0.99152 0.94651 0.86768 0.80379 0.83655 0.78419 1.20393 1.21392 1.19042 1.21160 0.89543 0.94456 1.50461 0.91033 1.19544 0.97138 0.92332 0.96068 1.21442 0.91174 0.99600 1.01502 1.22201 0.97544 0.87847 0.99681 1.60731 1.06031 1.14749 1.50186 1.21605 0.88377 0.93696 0.95776 0.93800 1.22418 0.97008 0.99130 0.96484 1.22438 0.97816 0.96478 0.99242 1.21835 0.98111 0.97127 0.95014 1.21933 1.02478 0.97736 0.90780 1.23019 0.98984 1.02977 0.96054 1.22884 0.95140 0.99179 1.03162 0.92795 0.96614 0.97360 0.91907 0.93192 0.96023 0.91522 0.84120 0.92073 0.90092 0.91799 0.91483 0.92034 0.90983 0.89031 0.88806 0.88553 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.18 16 11 C 0.06 0.95 5.51 -3.82 -0.02 0.93 16 12 N -0.68 -10.09 6.27 -105.69 -0.66 -10.75 16 13 C 0.12 1.46 3.10 -66.74 -0.21 1.26 16 14 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 15 C -0.11 -1.32 6.48 -25.00 -0.16 -1.48 16 16 C -0.12 -1.16 6.91 -24.67 -0.17 -1.33 16 17 C -0.08 -0.80 6.59 -25.16 -0.17 -0.96 16 18 C -0.13 -1.39 2.35 -154.19 -0.36 -1.75 16 19 C -0.17 -1.67 10.24 -26.91 -0.28 -1.95 16 20 C -0.17 -1.69 9.65 -26.92 -0.26 -1.95 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 23 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 28 H 0.34 4.77 5.95 -39.29 -0.23 4.54 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.04 6.28 -51.93 -0.33 0.72 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -30.58 300.62 -9.14 -39.73 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.80 Total: 0.19 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.31 Total: -23.51 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.11 Total: -38.43 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.58 -9.14 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595009254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.849 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds